Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18650 and PS417_18655 are separated by 78 nucleotides PS417_18655 and PS417_18660 are separated by 0 nucleotides PS417_18660 and PS417_18665 are separated by 78 nucleotides PS417_18665 and PS417_18670 are separated by 50 nucleotides PS417_18670 and PS417_18675 are separated by 78 nucleotides PS417_18675 and PS417_18680 are separated by 147 nucleotides PS417_18680 and PS417_18685 are separated by 206 nucleotides
PS417_18650: PS417_18650 - tRNA-Glu, at 4,053,214 to 4,053,289
_18650
PS417_18655: PS417_18655 - tRNA-Ala, at 4,053,368 to 4,053,443
_18655
PS417_18660: PS417_18660 - tRNA-Glu, at 4,053,444 to 4,053,519
_18660
PS417_18665: PS417_18665 - tRNA-Ala, at 4,053,598 to 4,053,673
_18665
PS417_18670: PS417_18670 - tRNA-Glu, at 4,053,724 to 4,053,799
_18670
PS417_18675: PS417_18675 - tRNA-Ala, at 4,053,878 to 4,053,953
_18675
PS417_18680: PS417_18680 - glutamyl-tRNA synthetase, at 4,054,101 to 4,055,582
_18680
PS417_18685: PS417_18685 - excinuclease ABC subunit B, at 4,055,789 to 4,057,804
_18685
Position (kb)
4054
4055
4056 Strain fitness (log2 ratio)
-1
0
1 at 4053.303 kb on - strand at 4053.303 kb on - strand at 4053.303 kb on - strand at 4055.732 kb on + strand at 4055.732 kb on + strand at 4055.733 kb on - strand at 4055.877 kb on + strand at 4055.877 kb on + strand at 4055.878 kb on - strand at 4055.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 4,053,303 - -0.1 4,053,303 - +0.9 4,053,303 - -0.1 4,055,732 + +0.4 4,055,732 + -0.8 4,055,733 - +0.7 4,055,877 + +0.1 4,055,877 + -0.3 4,055,878 - +0.0 4,055,878 - -0.7
Or see this region's nucleotide sequence