Strain Fitness in Pseudomonas simiae WCS417 around PS417_17160
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 3,745,707 | + | PS417_17150 | 0.79 | +0.3 | |
| 3,745,707 | + | PS417_17150 | 0.79 | +1.6 | |
| 3,745,707 | + | PS417_17150 | 0.79 | +0.2 | |
| 3,745,708 | - | PS417_17150 | 0.79 | -0.6 | |
| 3,745,794 | + | PS417_17150 | 0.89 | -1.0 | |
| 3,745,794 | + | PS417_17150 | 0.89 | -0.6 | |
| 3,745,941 | - | +1.3 | |||
| 3,746,025 | + | +0.7 | |||
| 3,746,082 | + | PS417_17155 | 0.15 | -0.3 | |
| 3,746,083 | - | PS417_17155 | 0.15 | -0.3 | |
| 3,746,083 | - | PS417_17155 | 0.15 | +0.1 | |
| 3,746,099 | - | PS417_17155 | 0.18 | -1.2 | |
| 3,746,361 | + | PS417_17155 | 0.65 | -0.1 | |
| 3,746,666 | + | PS417_17160 | 0.14 | +1.6 | |
| 3,746,667 | - | PS417_17160 | 0.14 | +0.0 | |
| 3,746,785 | + | PS417_17160 | 0.27 | +0.9 | |
| 3,747,722 | + | PS417_17165 | 0.12 | -2.1 | |
| 3,748,061 | + | PS417_17165 | 0.28 | -0.3 | |
| 3,748,062 | - | PS417_17165 | 0.28 | -1.6 | |
| 3,748,062 | - | PS417_17165 | 0.28 | +0.3 | |
| 3,748,227 | - | PS417_17165 | 0.36 | +0.1 | |
| 3,748,415 | + | PS417_17165 | 0.45 | +0.0 |
Or see this region's nucleotide sequence