Strain Fitness in Pseudomonas simiae WCS417 around PS417_16320

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16315 and PS417_16320 overlap by 4 nucleotidesPS417_16320 and PS417_16325 overlap by 1 nucleotidesPS417_16325 and PS417_16330 overlap by 4 nucleotidesPS417_16330 and PS417_16335 are separated by 24 nucleotides PS417_16315: PS417_16315 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 3,571,563 to 3,572,582 _16315 PS417_16320: PS417_16320 - protein tyrosine phosphatase, at 3,572,579 to 3,573,043 _16320 PS417_16325: PS417_16325 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 3,573,043 to 3,573,807 _16325 PS417_16330: PS417_16330 - hypothetical protein, at 3,573,804 to 3,573,989 _16330 PS417_16335: PS417_16335 - tetraacyldisaccharide 4'-kinase, at 3,574,014 to 3,575,024 _16335 Position (kb) 3572 3573 3574Strain fitness (log2 ratio) -1 0 1at 3572.937 kb on - strand, within PS417_16320at 3572.975 kb on - strand, within PS417_16320at 3572.985 kb on - strand, within PS417_16320

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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3,572,937 - PS417_16320 0.77 -1.0
3,572,975 - PS417_16320 0.85 -0.8
3,572,985 - PS417_16320 0.87 -0.8

Or see this region's nucleotide sequence