Strain Fitness in Pseudomonas simiae WCS417 around PS417_14935
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 3,260,683 | - | PS417_14930 | 0.17 | -0.3 | |
| 3,260,728 | - | PS417_14930 | 0.21 | -0.0 | |
| 3,260,943 | + | PS417_14930 | 0.39 | +2.5 | |
| 3,260,943 | + | PS417_14930 | 0.39 | -0.6 | |
| 3,261,035 | - | PS417_14930 | 0.47 | -0.1 | |
| 3,261,035 | - | +0.3 | |||
| 3,261,213 | + | PS417_14930 | 0.62 | -0.4 | |
| 3,261,213 | + | +0.3 | |||
| 3,261,214 | - | PS417_14930 | 0.62 | +0.1 | |
| 3,261,382 | - | PS417_14930 | 0.77 | -0.3 | |
| 3,261,382 | - | PS417_14930 | 0.77 | +0.6 | |
| 3,261,382 | - | PS417_14930 | 0.77 | +0.2 | |
| 3,261,815 | - | PS417_14935 | 0.16 | -0.6 | |
| 3,261,943 | + | PS417_14935 | 0.32 | -0.4 | |
| 3,262,126 | + | PS417_14935 | 0.54 | -2.6 | |
| 3,263,044 | - | PS417_14940 | 0.46 | +0.1 |
Or see this region's nucleotide sequence