Strain Fitness in Pseudomonas simiae WCS417 around PS417_13050
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 2,851,676 | - | PS417_13045 | 0.47 | -0.5 | |
| 2,851,822 | + | PS417_13045 | 0.55 | -0.8 | |
| 2,851,822 | + | PS417_13045 | 0.55 | -0.1 | |
| 2,851,822 | + | PS417_13045 | 0.55 | -0.0 | |
| 2,851,841 | - | PS417_13045 | 0.56 | -0.7 | |
| 2,851,841 | - | PS417_13045 | 0.56 | +0.1 | |
| 2,852,042 | - | PS417_13045 | 0.68 | +0.2 | |
| 2,852,042 | - | PS417_13045 | 0.68 | +0.2 | |
| 2,852,042 | - | PS417_13045 | 0.68 | -0.1 | |
| 2,852,149 | + | PS417_13045 | 0.74 | +1.1 | |
| 2,852,149 | + | PS417_13045 | 0.74 | -0.1 | |
| 2,852,150 | - | PS417_13045 | 0.74 | +0.2 | |
| 2,852,150 | - | PS417_13045 | 0.74 | -0.1 | |
| 2,852,150 | - | PS417_13045 | 0.74 | -0.8 | |
| 2,852,938 | - | PS417_13050 | 0.57 | -1.2 | |
| 2,853,027 | + | PS417_13050 | 0.74 | -0.4 | |
| 2,853,056 | + | PS417_13050 | 0.79 | -0.4 | |
| 2,853,124 | - | -0.4 | |||
| 2,853,124 | - | +0.3 | |||
| 2,853,259 | + | PS417_13055 | 0.18 | +0.2 | |
| 2,853,539 | - | PS417_13055 | 0.67 | -0.7 | |
| 2,853,614 | - | PS417_13055 | 0.81 | +0.0 |
Or see this region's nucleotide sequence