Strain Fitness in Pseudomonas simiae WCS417 around PS417_11135
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 2,385,987 | + | PS417_11130 | 0.38 | -0.7 | |
| 2,385,987 | + | PS417_11130 | 0.38 | +0.4 | |
| 2,385,988 | - | PS417_11130 | 0.38 | +0.4 | |
| 2,385,992 | - | PS417_11130 | 0.39 | +0.4 | |
| 2,386,014 | + | PS417_11130 | 0.40 | -0.3 | |
| 2,386,621 | - | PS417_11130 | 0.79 | +0.6 | |
| 2,386,642 | - | PS417_11130 | 0.80 | -0.9 | |
| 2,387,459 | - | PS417_11135 | 0.53 | +1.3 | |
| 2,387,836 | + | -0.2 | |||
| 2,387,836 | + | -1.1 | |||
| 2,387,837 | - | +1.1 | |||
| 2,387,837 | - | -0.3 | |||
| 2,387,898 | - | +0.3 | |||
| 2,388,363 | + | PS417_11140 | 0.54 | -0.5 | |
| 2,388,424 | - | +0.3 | |||
| 2,388,463 | - | PS417_11140 | 0.66 | -0.1 | |
| 2,388,463 | - | PS417_11140 | 0.66 | -0.4 | |
| 2,388,630 | + | PS417_11140 | 0.86 | -0.7 | |
| 2,388,631 | - | PS417_11140 | 0.86 | -0.5 |
Or see this region's nucleotide sequence