Strain Fitness in Pseudomonas simiae WCS417 around PS417_10320
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 2,205,924 | + | PS417_10315 | 0.53 | -0.2 | |
| 2,206,001 | + | PS417_10315 | 0.59 | -0.4 | |
| 2,206,002 | - | PS417_10315 | 0.59 | +0.3 | |
| 2,206,151 | + | PS417_10315 | 0.71 | +0.1 | |
| 2,206,151 | + | PS417_10315 | 0.71 | +0.0 | |
| 2,206,151 | + | PS417_10315 | 0.71 | -0.5 | |
| 2,206,152 | - | PS417_10315 | 0.72 | -0.8 | |
| 2,206,152 | - | PS417_10315 | 0.72 | -0.3 | |
| 2,206,185 | - | PS417_10315 | 0.74 | +0.1 | |
| 2,206,209 | - | PS417_10315 | 0.76 | +0.2 | |
| 2,206,337 | + | PS417_10315 | 0.87 | -0.6 | |
| 2,206,338 | - | PS417_10315 | 0.87 | +1.1 | |
| 2,206,640 | + | +1.1 | |||
| 2,206,640 | + | PS417_10320 | 0.23 | -0.6 | |
| 2,206,743 | - | PS417_10320 | 0.40 | -0.0 | |
| 2,207,094 | + | -0.6 | |||
| 2,207,095 | - | -0.3 | |||
| 2,207,169 | - | +1.2 | |||
| 2,207,182 | + | -0.9 | |||
| 2,207,182 | + | -0.8 | |||
| 2,207,183 | - | +1.1 | |||
| 2,207,183 | - | +0.2 | |||
| 2,207,745 | + | PS417_10330 | 0.11 | -0.2 | |
| 2,207,745 | + | PS417_10330 | 0.11 | +0.7 | |
| 2,207,815 | - | PS417_10330 | 0.15 | -0.5 | |
| 2,207,878 | + | PS417_10330 | 0.20 | -0.2 | |
| 2,207,988 | - | PS417_10330 | 0.27 | -1.7 |
Or see this region's nucleotide sequence