Strain Fitness in Pseudomonas simiae WCS417 around PS417_09370
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 2,031,613 | + | +0.4 | |||
| 2,031,656 | + | +0.3 | |||
| 2,031,657 | - | -0.8 | |||
| 2,031,783 | + | -0.0 | |||
| 2,031,792 | + | -0.4 | |||
| 2,031,792 | + | -0.3 | |||
| 2,031,962 | - | PS417_09365 | 0.22 | -0.4 | |
| 2,031,987 | + | +0.2 | |||
| 2,032,035 | + | PS417_09365 | 0.32 | +0.0 | |
| 2,032,224 | + | +1.9 | |||
| 2,032,224 | + | PS417_09365 | 0.59 | -1.7 | |
| 2,032,224 | + | PS417_09365 | 0.59 | -0.4 | |
| 2,032,224 | + | PS417_09365 | 0.59 | -0.1 | |
| 2,032,225 | - | PS417_09365 | 0.59 | -0.2 | |
| 2,032,228 | + | PS417_09365 | 0.59 | -0.1 | |
| 2,032,229 | - | PS417_09365 | 0.60 | +0.4 | |
| 2,032,435 | - | PS417_09365 | 0.88 | -0.2 | |
| 2,032,857 | + | PS417_09370 | 0.29 | +0.2 | |
| 2,033,346 | - | PS417_09370 | 0.83 | -1.2 | |
| 2,033,349 | - | PS417_09370 | 0.83 | -0.8 | |
| 2,033,886 | - | PS417_09375 | 0.43 | -0.1 |
Or see this region's nucleotide sequence