Strain Fitness in Pseudomonas simiae WCS417 around PS417_09200

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,998,670	+				+0.1
1,998,671	-				+0.8
1,998,671	-				+0.8
1,998,671	-				-0.5
1,998,781	-		PS417_09195	0.13	+0.2
1,999,045	+		PS417_09195	0.56	+0.6
1,999,045	+		PS417_09195	0.56	-0.8
1,999,124	-		PS417_09195	0.68	+0.3
1,999,139	+		PS417_09195	0.71	-1.4
1,999,140	-		PS417_09195	0.71	+0.0
1,999,204	-		PS417_09195	0.81	-0.2
1,999,204	-		PS417_09195	0.81	-1.0
1,999,250	-		PS417_09195	0.89	+0.2
1,999,250	-		PS417_09195	0.89	-0.2
1,999,261	-				+1.1
1,999,261	-				+1.4
1,999,317	+				+0.0
1,999,318	-				-0.6
1,999,318	-				-0.4
1,999,327	+				+0.2
1,999,345	+				+0.3
1,999,345	+				+0.2
1,999,346	-				+0.4
1,999,418	-				-0.1
1,999,426	+				+0.9
1,999,426	+				+0.2
1,999,427	-				+0.1
1,999,446	-				+0.4
1,999,642	+		PS417_09200	0.20	+0.8
1,999,643	-		PS417_09200	0.20	-0.2
1,999,811	+		PS417_09200	0.38	-0.0
1,999,943	-		PS417_09200	0.52	+0.3
1,999,943	-		PS417_09200	0.52	+0.2
2,000,452	-				-1.1
2,000,563	+		PS417_09205	0.23	+0.4
2,000,563	+		PS417_09205	0.23	-0.0
2,000,572	+		PS417_09205	0.24	-0.5
2,000,572	+		PS417_09205	0.24	+0.7
2,000,572	+		PS417_09205	0.24	+1.6
2,000,572	+		PS417_09205	0.24	+0.2
2,000,573	-		PS417_09205	0.24	+1.3
2,000,617	+		PS417_09205	0.30	-0.0
2,000,700	+		PS417_09205	0.41	+0.1
2,000,898	+		PS417_09205	0.66	+0.2
2,000,957	-		PS417_09205	0.74	+0.2
2,000,957	-		PS417_09205	0.74	+0.1
2,001,112	+				+0.2
2,001,112	+				+1.9
2,001,112	+				+0.5
2,001,113	-				+0.7
2,001,113	-				-0.5
2,001,131	+				-0.3
2,001,235	+				+1.0
2,001,236	-				+0.0
2,001,328	-				+1.5
2,001,328	-				+0.9
2,001,365	-		PS417_09210	0.12	-1.9
2,001,369	+		PS417_09210	0.13	-0.5