Strain Fitness in Pseudomonas simiae WCS417 around PS417_08240
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 1,804,772 | - | PS417_08235 | 0.17 | -0.2 | |
| 1,805,053 | - | PS417_08235 | 0.43 | +0.3 | |
| 1,805,195 | - | PS417_08235 | 0.56 | -0.6 | |
| 1,805,354 | - | PS417_08235 | 0.71 | -0.1 | |
| 1,805,673 | - | +3.1 | |||
| 1,805,753 | - | PS417_08240 | 0.10 | -0.7 | |
| 1,806,069 | + | PS417_08240 | 0.51 | +1.7 | |
| 1,806,567 | + | +0.2 | |||
| 1,806,954 | - | PS417_08245 | 0.50 | -0.5 | |
| 1,807,354 | - | +0.8 | |||
| 1,807,367 | - | -0.6 | |||
| 1,807,444 | + | +0.2 | |||
| 1,807,445 | - | -0.3 |
Or see this region's nucleotide sequence