Strain Fitness in Pseudomonas simiae WCS417 around PS417_00680

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
138,616	-		PS417_00675	0.30	-0.2
139,232	-				-0.8
139,232	-				-0.5
139,323	+				-0.4
139,499	+				-0.2
139,499	+				-0.3
139,500	-				+0.1
139,928	+		PS417_00680	0.23	+0.7
139,928	+		PS417_00680	0.23	-0.4
140,071	-		PS417_00680	0.29	+0.2
140,132	+		PS417_00680	0.31	+0.2
140,209	-		PS417_00680	0.34	-0.1
140,226	-		PS417_00680	0.35	-0.1
140,226	-		PS417_00680	0.35	+0.2
140,226	-		PS417_00680	0.35	-0.1
140,334	-		PS417_00680	0.39	+1.0
140,334	-		PS417_00680	0.39	+0.0
140,334	-		PS417_00680	0.39	-0.0
140,334	-		PS417_00680	0.39	+1.1
140,384	-		PS417_00680	0.41	+0.6
140,407	-		PS417_00680	0.42	-0.7
140,417	+		PS417_00680	0.43	-0.1
140,537	+		PS417_00680	0.48	-0.2
140,537	+		PS417_00680	0.48	+0.4
140,552	+		PS417_00680	0.48	-0.3
140,553	-		PS417_00680	0.48	+0.5
140,618	+		PS417_00680	0.51	+0.4
140,640	-		PS417_00680	0.52	+0.0
140,706	-		PS417_00680	0.54	+0.1
140,825	+		PS417_00680	0.59	+0.9
140,825	+		PS417_00680	0.59	+0.7
140,825	+		PS417_00680	0.59	-0.1
140,825	+		PS417_00680	0.59	-0.4
140,828	+		PS417_00680	0.59	-0.3
140,828	+		PS417_00680	0.59	-0.7
140,828	+		PS417_00680	0.59	+0.3
140,828	+		PS417_00680	0.59	-0.7
140,829	-		PS417_00680	0.59	-0.2
140,829	-		PS417_00680	0.59	+1.6
140,858	+		PS417_00680	0.61	+0.4
140,966	+		PS417_00680	0.65	-0.1
140,966	+		PS417_00680	0.65	+0.2
140,992	+		PS417_00680	0.66	+0.1
141,113	+		PS417_00680	0.71	+0.4
141,114	-		PS417_00680	0.71	+0.3
141,114	-		PS417_00680	0.71	+0.8
141,243	-		PS417_00680	0.76	-0.6
141,340	+		PS417_00680	0.80	-0.1
141,446	+		PS417_00680	0.85	-0.2
141,447	-		PS417_00680	0.85	-0.1
141,524	+		PS417_00680	0.88	+0.2
141,524	+		PS417_00680	0.88	-0.6
141,608	+				+0.1
141,608	+				+0.9
141,609	-				+0.8
141,609	-				-0.2
141,635	+				+0.0
141,636	-				+0.0
141,740	+				-0.3
141,741	-				-0.6
141,741	-				+0.9
141,741	-				-0.1
141,773	+				+0.6
141,773	+				+1.6
141,774	-				+1.2
141,776	+				+1.3
141,813	-				+0.0
141,821	+				+0.3
141,839	-				+0.2
141,980	-				+0.8
142,006	-				+0.4
142,006	-				+0.0
142,009	+				+1.1
142,087	+		PS417_00685	0.19	+0.1
142,123	+		PS417_00685	0.24	+0.0
142,123	+		PS417_00685	0.24	+0.5
142,123	+		PS417_00685	0.24	-0.9
142,124	-		PS417_00685	0.24	+2.1
142,373	-		PS417_00685	0.59	+3.1
142,522	+				+1.8
142,522	+		PS417_00685	0.81	-0.4
142,589	-				-0.1
142,662	+				-0.6
142,665	+				+1.7
142,666	-				-0.6
142,666	-				-0.6
142,770	+				+0.2
142,770	+				+0.1
142,770	+				-0.3