Strain Fitness in Pseudomonas simiae WCS417 around PS417_05110

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05095 and PS417_05100 overlap by 4 nucleotidesPS417_05100 and PS417_05105 are separated by 170 nucleotidesPS417_05105 and PS417_05110 overlap by 4 nucleotidesPS417_05110 and PS417_05115 are separated by 0 nucleotidesPS417_05115 and PS417_05120 are separated by 8 nucleotidesPS417_05120 and PS417_05125 overlap by 4 nucleotides PS417_05095: PS417_05095 - membrane protein, at 1,133,013 to 1,133,954 _05095 PS417_05100: PS417_05100 - RNA polymerase sigma factor, at 1,133,951 to 1,134,439 _05100 PS417_05105: PS417_05105 - membrane protein, at 1,134,610 to 1,134,912 _05105 PS417_05110: PS417_05110 - peptidase, at 1,134,909 to 1,136,483 _05110 PS417_05115: PS417_05115 - hypothetical protein, at 1,136,484 to 1,136,810 _05115 PS417_05120: PS417_05120 - RNA polymerase subunit sigma-24, at 1,136,819 to 1,137,397 _05120 PS417_05125: PS417_05125 - sugar ABC transporter substrate-binding protein, at 1,137,394 to 1,138,371 _05125 Position (kb) 1134 1135 1136 1137Strain fitness (log2 ratio) -2 -1 0 1 2at 1133.954 kb on + strandat 1134.016 kb on + strand, within PS417_05100at 1134.016 kb on + strand, within PS417_05100at 1134.202 kb on - strand, within PS417_05100at 1134.408 kb on + strandat 1134.408 kb on + strandat 1134.408 kb on + strandat 1134.409 kb on - strandat 1134.471 kb on - strandat 1134.641 kb on - strand, within PS417_05105at 1134.787 kb on + strand, within PS417_05105at 1134.787 kb on + strand, within PS417_05105at 1134.788 kb on - strand, within PS417_05105at 1134.788 kb on - strand, within PS417_05105at 1135.011 kb on + strandat 1135.012 kb on - strandat 1135.101 kb on + strand, within PS417_05110at 1135.101 kb on + strand, within PS417_05110at 1135.102 kb on - strand, within PS417_05110at 1135.294 kb on - strand, within PS417_05110at 1135.511 kb on + strand, within PS417_05110at 1135.511 kb on + strand, within PS417_05110at 1135.511 kb on + strand, within PS417_05110at 1135.511 kb on + strand, within PS417_05110at 1135.512 kb on - strand, within PS417_05110at 1135.512 kb on - strand, within PS417_05110at 1135.515 kb on + strand, within PS417_05110at 1135.515 kb on + strand, within PS417_05110at 1135.515 kb on + strand, within PS417_05110at 1135.516 kb on - strand, within PS417_05110at 1135.572 kb on + strand, within PS417_05110at 1135.572 kb on + strand, within PS417_05110at 1135.616 kb on + strand, within PS417_05110at 1135.617 kb on - strand, within PS417_05110at 1135.674 kb on + strand, within PS417_05110at 1135.675 kb on - strand, within PS417_05110at 1135.675 kb on - strand, within PS417_05110at 1135.675 kb on - strand, within PS417_05110at 1135.890 kb on + strand, within PS417_05110at 1135.891 kb on - strand, within PS417_05110at 1135.938 kb on + strand, within PS417_05110at 1135.938 kb on + strand, within PS417_05110at 1135.939 kb on - strand, within PS417_05110at 1135.943 kb on + strand, within PS417_05110at 1136.508 kb on + strandat 1136.508 kb on + strandat 1136.561 kb on - strandat 1137.038 kb on + strand, within PS417_05120at 1137.039 kb on - strand, within PS417_05120at 1137.039 kb on - strand, within PS417_05120at 1137.320 kb on - strand, within PS417_05120

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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1,133,954 + +0.2
1,134,016 + PS417_05100 0.13 +0.1
1,134,016 + PS417_05100 0.13 +0.3
1,134,202 - PS417_05100 0.51 +0.3
1,134,408 + -0.4
1,134,408 + +1.5
1,134,408 + +0.2
1,134,409 - -1.1
1,134,471 - -0.1
1,134,641 - PS417_05105 0.10 -1.0
1,134,787 + PS417_05105 0.58 -0.5
1,134,787 + PS417_05105 0.58 -0.6
1,134,788 - PS417_05105 0.59 -1.5
1,134,788 - PS417_05105 0.59 +0.1
1,135,011 + -0.4
1,135,012 - -0.5
1,135,101 + PS417_05110 0.12 -1.1
1,135,101 + PS417_05110 0.12 -0.2
1,135,102 - PS417_05110 0.12 -1.3
1,135,294 - PS417_05110 0.24 -0.8
1,135,511 + PS417_05110 0.38 -0.6
1,135,511 + PS417_05110 0.38 +0.8
1,135,511 + PS417_05110 0.38 -0.6
1,135,511 + PS417_05110 0.38 -1.2
1,135,512 - PS417_05110 0.38 -1.6
1,135,512 - PS417_05110 0.38 -0.6
1,135,515 + PS417_05110 0.38 -0.3
1,135,515 + PS417_05110 0.38 +0.1
1,135,515 + PS417_05110 0.38 -1.2
1,135,516 - PS417_05110 0.39 +2.7
1,135,572 + PS417_05110 0.42 -2.6
1,135,572 + PS417_05110 0.42 -1.6
1,135,616 + PS417_05110 0.45 -0.5
1,135,617 - PS417_05110 0.45 -1.2
1,135,674 + PS417_05110 0.49 -1.1
1,135,675 - PS417_05110 0.49 +1.0
1,135,675 - PS417_05110 0.49 -0.2
1,135,675 - PS417_05110 0.49 -1.6
1,135,890 + PS417_05110 0.62 -1.5
1,135,891 - PS417_05110 0.62 +0.7
1,135,938 + PS417_05110 0.65 +0.8
1,135,938 + PS417_05110 0.65 -1.3
1,135,939 - PS417_05110 0.65 -0.5
1,135,943 + PS417_05110 0.66 -1.0
1,136,508 + -1.0
1,136,508 + +0.1
1,136,561 - -0.5
1,137,038 + PS417_05120 0.38 +0.7
1,137,039 - PS417_05120 0.38 -0.3
1,137,039 - PS417_05120 0.38 -0.5
1,137,320 - PS417_05120 0.87 -0.1

Or see this region's nucleotide sequence