Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04090 and PS417_04095 are separated by 205 nucleotides PS417_04095 and PS417_04100 overlap by 8 nucleotides PS417_04100 and PS417_04105 are separated by 111 nucleotides
PS417_04090: PS417_04090 - hypothetical protein, at 919,950 to 920,663
_04090
PS417_04095: PS417_04095 - histidine kinase, at 920,869 to 922,131
_04095
PS417_04100: PS417_04100 - chemotaxis protein CheY, at 922,124 to 922,684
_04100
PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520
_04105
Position (kb) 920
921
922
923 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 920.075 kb on - strand, within PS417_04090 at 920.122 kb on + strand, within PS417_04090 at 920.122 kb on + strand, within PS417_04090 at 920.213 kb on + strand, within PS417_04090 at 920.572 kb on + strand, within PS417_04090 at 920.572 kb on + strand, within PS417_04090 at 920.573 kb on - strand, within PS417_04090 at 920.679 kb on + strand at 920.700 kb on + strand at 920.701 kb on - strand at 920.826 kb on + strand at 921.184 kb on + strand, within PS417_04095 at 921.268 kb on + strand, within PS417_04095 at 922.749 kb on - strand at 922.749 kb on - strand at 922.982 kb on + strand, within PS417_04105 at 922.982 kb on + strand, within PS417_04105 at 922.982 kb on + strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 923.096 kb on + strand, within PS417_04105 at 923.096 kb on + strand, within PS417_04105
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 919,883 + +3.2 919,883 + -0.6 919,883 + +0.0 919,883 + +3.4 919,883 + +0.2 919,883 + -0.6 919,884 - +0.1 919,884 - -0.2 919,884 - +0.3 919,884 - -0.8 919,884 - -0.8 919,884 - -0.2 919,887 + +0.1 919,887 + +0.3 919,887 + +0.8 919,887 + -0.7 919,887 + +0.1 919,888 - -0.7 919,888 - -0.4 919,888 - -0.5 919,888 - +1.9 919,888 - -0.5 919,888 - +0.0 920,075 - PS417_04090 0.18 -0.1 920,122 + PS417_04090 0.24 -0.8 920,122 + PS417_04090 0.24 -1.0 920,213 + PS417_04090 0.37 -1.1 920,572 + PS417_04090 0.87 +0.5 920,572 + PS417_04090 0.87 -0.4 920,573 - PS417_04090 0.87 +0.5 920,679 + +0.8 920,700 + -0.3 920,701 - +0.4 920,826 + -0.2 921,184 + PS417_04095 0.25 +1.6 921,268 + PS417_04095 0.32 -0.1 922,749 - +0.3 922,749 - +0.7 922,982 + PS417_04105 0.11 -1.9 922,982 + PS417_04105 0.11 -2.1 922,982 + PS417_04105 0.11 -2.6 922,983 - PS417_04105 0.11 -2.7 922,983 - PS417_04105 0.11 -0.7 922,983 - PS417_04105 0.11 -1.2 923,096 + PS417_04105 0.17 -1.7 923,096 + PS417_04105 0.17 -2.0
Or see this region's nucleotide sequence