Strain Fitness in Pseudomonas simiae WCS417 around PS417_03415

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03410 and PS417_03415 are separated by 54 nucleotidesPS417_03415 and PS417_03420 are separated by 180 nucleotides PS417_03410: PS417_03410 - gamma-glutamyltransferase, at 781,819 to 783,630 _03410 PS417_03415: PS417_03415 - isomerase, at 783,685 to 784,464 _03415 PS417_03420: PS417_03420 - hypothetical protein, at 784,645 to 788,943 _03420 Position (kb) 783 784 785Strain fitness (log2 ratio) -1 0 1 2 3 4at 782.817 kb on - strand, within PS417_03410at 782.817 kb on - strand, within PS417_03410at 782.904 kb on - strand, within PS417_03410at 783.011 kb on + strand, within PS417_03410at 783.480 kb on + strandat 783.710 kb on + strandat 783.711 kb on - strandat 783.846 kb on + strand, within PS417_03415at 783.847 kb on - strand, within PS417_03415at 784.028 kb on + strand, within PS417_03415at 784.028 kb on + strand, within PS417_03415at 784.028 kb on + strand, within PS417_03415at 784.320 kb on - strand, within PS417_03415at 784.452 kb on + strandat 784.481 kb on - strandat 784.481 kb on - strandat 784.499 kb on + strandat 784.500 kb on - strandat 784.500 kb on - strandat 784.608 kb on + strandat 784.608 kb on + strandat 784.609 kb on - strandat 784.638 kb on + strandat 784.744 kb on + strandat 784.867 kb on + strandat 784.868 kb on - strandat 784.868 kb on - strandat 784.902 kb on + strandat 784.903 kb on - strandat 785.239 kb on - strand, within PS417_03420

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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782,817 - PS417_03410 0.55 +0.9
782,817 - PS417_03410 0.55 -0.3
782,904 - PS417_03410 0.60 -0.2
783,011 + PS417_03410 0.66 -0.6
783,480 + -0.4
783,710 + +1.3
783,711 - +0.2
783,846 + PS417_03415 0.21 -1.3
783,847 - PS417_03415 0.21 +0.2
784,028 + PS417_03415 0.44 +4.6
784,028 + PS417_03415 0.44 -0.4
784,028 + PS417_03415 0.44 -0.4
784,320 - PS417_03415 0.81 -0.1
784,452 + +0.3
784,481 - +1.3
784,481 - -0.5
784,499 + +0.5
784,500 - -0.5
784,500 - -0.0
784,608 + -0.1
784,608 + +1.3
784,609 - -0.2
784,638 + +0.1
784,744 + -0.1
784,867 + -1.7
784,868 - -0.4
784,868 - -0.8
784,902 + -0.4
784,903 - +2.6
785,239 - PS417_03420 0.14 +0.0

Or see this region's nucleotide sequence