Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03280 and PS417_03285 overlap by 4 nucleotides PS417_03285 and PS417_03290 overlap by 11 nucleotides PS417_03290 and PS417_03295 are separated by 148 nucleotides PS417_03295 and PS417_03300 overlap by 8 nucleotides
PS417_03280: PS417_03280 - chromosome partitioning protein ParA, at 751,383 to 754,223
_03280
PS417_03285: PS417_03285 - chromosome partitioning protein, at 754,220 to 754,927
_03285
PS417_03290: PS417_03290 - hypothetical protein, at 754,917 to 756,194
_03290
PS417_03295: PS417_03295 - energy transducer TonB, at 756,343 to 757,128
_03295
PS417_03300: PS417_03300 - alanine acetyltransferase, at 757,121 to 757,573
_03300
Position (kb) 754
755
756
757 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 753.988 kb on + strand at 753.988 kb on + strand at 753.988 kb on + strand at 753.989 kb on - strand at 754.036 kb on + strand at 754.036 kb on + strand at 754.106 kb on + strand at 754.126 kb on + strand at 754.126 kb on + strand at 754.127 kb on - strand at 754.378 kb on + strand, within PS417_03285 at 754.570 kb on - strand, within PS417_03285 at 754.743 kb on + strand, within PS417_03285 at 754.746 kb on + strand, within PS417_03285 at 754.747 kb on - strand, within PS417_03285 at 754.834 kb on - strand, within PS417_03285 at 754.934 kb on + strand at 755.273 kb on - strand, within PS417_03290 at 755.278 kb on + strand, within PS417_03290 at 755.278 kb on + strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.860 kb on + strand, within PS417_03290 at 755.861 kb on - strand, within PS417_03290 at 755.938 kb on + strand, within PS417_03290 at 756.145 kb on - strand at 756.145 kb on - strand at 756.145 kb on - strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.220 kb on - strand at 756.234 kb on + strand at 756.235 kb on - strand at 756.323 kb on + strand at 757.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 753,988 + -0.6 753,988 + -0.6 753,988 + +1.0 753,989 - +1.3 754,036 + -0.7 754,036 + +0.2 754,106 + +0.6 754,126 + +1.5 754,126 + +0.2 754,127 - +1.2 754,378 + PS417_03285 0.22 -0.0 754,570 - PS417_03285 0.49 -0.8 754,743 + PS417_03285 0.74 -0.3 754,746 + PS417_03285 0.74 -0.1 754,747 - PS417_03285 0.74 +0.2 754,834 - PS417_03285 0.87 -1.4 754,934 + +0.4 755,273 - PS417_03290 0.28 +0.5 755,278 + PS417_03290 0.28 -0.2 755,278 + PS417_03290 0.28 +1.5 755,279 - PS417_03290 0.28 -0.2 755,279 - PS417_03290 0.28 -0.0 755,279 - PS417_03290 0.28 +7.6 755,279 - PS417_03290 0.28 -0.1 755,860 + PS417_03290 0.74 -0.2 755,861 - PS417_03290 0.74 -0.2 755,938 + PS417_03290 0.80 -0.4 756,145 - -0.4 756,145 - +0.1 756,145 - -2.0 756,219 + +0.4 756,219 + -0.4 756,219 + +0.1 756,220 - +0.3 756,234 + +0.4 756,235 - -0.6 756,323 + -0.8 757,134 + +0.7
Or see this region's nucleotide sequence