Strain Fitness in Pseudomonas simiae WCS417 around PS417_03240

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03235 and PS417_03240 are separated by 88 nucleotidesPS417_03240 and PS417_03245 are separated by 125 nucleotides PS417_03235: PS417_03235 - xanthine permease XanP, at 738,510 to 739,904 _03235 PS417_03240: PS417_03240 - LysR family transcriptional regulator, at 739,993 to 740,913 _03240 PS417_03245: PS417_03245 - omega amino acid--pyruvate aminotransferase, at 741,039 to 742,388 _03245 Position (kb) 739 740 741Strain fitness (log2 ratio) -2 -1 0 1at 739.026 kb on - strand, within PS417_03235at 739.035 kb on + strand, within PS417_03235at 739.035 kb on + strand, within PS417_03235at 739.036 kb on - strand, within PS417_03235at 739.037 kb on + strand, within PS417_03235at 739.037 kb on + strand, within PS417_03235at 739.038 kb on - strand, within PS417_03235at 739.038 kb on - strand, within PS417_03235at 739.038 kb on - strand, within PS417_03235at 739.038 kb on - strand, within PS417_03235at 739.039 kb on + strand, within PS417_03235at 739.039 kb on + strand, within PS417_03235at 739.039 kb on + strand, within PS417_03235at 739.040 kb on - strand, within PS417_03235at 739.040 kb on - strand, within PS417_03235at 739.040 kb on - strand, within PS417_03235at 739.109 kb on + strand, within PS417_03235at 739.121 kb on - strand, within PS417_03235at 739.332 kb on + strand, within PS417_03235at 739.333 kb on - strand, within PS417_03235at 739.695 kb on - strand, within PS417_03235at 739.698 kb on + strand, within PS417_03235at 739.698 kb on + strand, within PS417_03235at 739.698 kb on + strand, within PS417_03235at 739.733 kb on - strand, within PS417_03235at 739.809 kb on + strandat 739.868 kb on - strandat 739.868 kb on - strandat 740.240 kb on + strand, within PS417_03240at 740.240 kb on + strand, within PS417_03240at 740.323 kb on - strand, within PS417_03240at 740.333 kb on + strand, within PS417_03240at 740.334 kb on - strand, within PS417_03240at 740.440 kb on + strand, within PS417_03240at 740.440 kb on + strand, within PS417_03240at 740.440 kb on + strand, within PS417_03240at 740.441 kb on - strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.737 kb on + strand, within PS417_03240at 740.913 kb on + strandat 740.981 kb on + strandat 740.981 kb on + strandat 741.122 kb on + strandat 741.165 kb on - strandat 741.439 kb on - strand, within PS417_03245at 741.439 kb on - strand, within PS417_03245at 741.448 kb on + strand, within PS417_03245at 741.548 kb on + strand, within PS417_03245at 741.549 kb on - strand, within PS417_03245at 741.549 kb on - strand, within PS417_03245at 741.549 kb on - strand, within PS417_03245at 741.593 kb on + strand, within PS417_03245at 741.593 kb on + strand, within PS417_03245at 741.593 kb on + strand, within PS417_03245at 741.594 kb on - strand, within PS417_03245at 741.594 kb on - strand, within PS417_03245at 741.594 kb on - strand, within PS417_03245at 741.806 kb on - strand, within PS417_03245at 741.806 kb on - strand, within PS417_03245

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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739,026 - PS417_03235 0.37 -0.8
739,035 + PS417_03235 0.38 -0.5
739,035 + PS417_03235 0.38 +0.8
739,036 - PS417_03235 0.38 -0.8
739,037 + PS417_03235 0.38 -0.5
739,037 + PS417_03235 0.38 -1.7
739,038 - PS417_03235 0.38 +0.3
739,038 - PS417_03235 0.38 -1.1
739,038 - PS417_03235 0.38 -0.0
739,038 - PS417_03235 0.38 +0.5
739,039 + PS417_03235 0.38 -0.5
739,039 + PS417_03235 0.38 -0.4
739,039 + PS417_03235 0.38 +0.4
739,040 - PS417_03235 0.38 +0.3
739,040 - PS417_03235 0.38 -0.1
739,040 - PS417_03235 0.38 -0.1
739,109 + PS417_03235 0.43 -0.5
739,121 - PS417_03235 0.44 -0.3
739,332 + PS417_03235 0.59 -0.6
739,333 - PS417_03235 0.59 +0.6
739,695 - PS417_03235 0.85 +0.1
739,698 + PS417_03235 0.85 -0.3
739,698 + PS417_03235 0.85 +0.7
739,698 + PS417_03235 0.85 -2.2
739,733 - PS417_03235 0.88 -0.4
739,809 + +0.0
739,868 - -0.5
739,868 - -1.0
740,240 + PS417_03240 0.27 +0.3
740,240 + PS417_03240 0.27 -0.4
740,323 - PS417_03240 0.36 +0.0
740,333 + PS417_03240 0.37 +0.7
740,334 - PS417_03240 0.37 -0.1
740,440 + PS417_03240 0.49 -0.5
740,440 + PS417_03240 0.49 +0.3
740,440 + PS417_03240 0.49 +0.4
740,441 - PS417_03240 0.49 +0.5
740,659 + PS417_03240 0.72 -0.5
740,659 + PS417_03240 0.72 +1.7
740,659 + PS417_03240 0.72 +0.8
740,659 + PS417_03240 0.72 +0.1
740,737 + PS417_03240 0.81 -1.2
740,913 + +0.3
740,981 + -1.3
740,981 + -0.4
741,122 + +0.1
741,165 - -0.4
741,439 - PS417_03245 0.30 +0.0
741,439 - PS417_03245 0.30 -0.9
741,448 + PS417_03245 0.30 -0.6
741,548 + PS417_03245 0.38 -0.5
741,549 - PS417_03245 0.38 +1.7
741,549 - PS417_03245 0.38 -0.3
741,549 - PS417_03245 0.38 +0.3
741,593 + PS417_03245 0.41 -1.3
741,593 + PS417_03245 0.41 +1.6
741,593 + PS417_03245 0.41 -1.6
741,594 - PS417_03245 0.41 +1.5
741,594 - PS417_03245 0.41 -0.3
741,594 - PS417_03245 0.41 +1.7
741,806 - PS417_03245 0.57 -0.6
741,806 - PS417_03245 0.57 -0.1

Or see this region's nucleotide sequence