Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00305 and PS417_00310 are separated by 21 nucleotides PS417_00310 and PS417_00315 are separated by 35 nucleotides PS417_00315 and PS417_00320 are separated by 6 nucleotides
PS417_00305: PS417_00305 - cytochrome oxidase subunit I, at 60,292 to 61,878
_00305
PS417_00310: PS417_00310 - cysteine synthase, at 61,900 to 62,451
_00310
PS417_00315: PS417_00315 - MFS transporter, at 62,487 to 63,374
_00315
PS417_00320: PS417_00320 - hypothetical protein, at 63,381 to 63,584
_00320
Position (kb) 61
62
63 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 61.069 kb on + strand, within PS417_00305 at 61.069 kb on + strand, within PS417_00305 at 61.069 kb on + strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305 at 61.255 kb on + strand, within PS417_00305 at 61.255 kb on + strand, within PS417_00305 at 61.255 kb on + strand, within PS417_00305 at 61.255 kb on + strand at 61.256 kb on - strand, within PS417_00305 at 61.256 kb on - strand, within PS417_00305 at 61.447 kb on + strand, within PS417_00305 at 61.448 kb on - strand, within PS417_00305 at 61.471 kb on + strand, within PS417_00305 at 61.472 kb on - strand, within PS417_00305 at 61.475 kb on + strand, within PS417_00305 at 61.475 kb on + strand, within PS417_00305 at 61.517 kb on - strand, within PS417_00305 at 61.519 kb on + strand, within PS417_00305 at 61.520 kb on - strand, within PS417_00305 at 61.549 kb on + strand, within PS417_00305 at 61.550 kb on - strand, within PS417_00305 at 61.663 kb on + strand, within PS417_00305 at 61.994 kb on - strand, within PS417_00310 at 61.994 kb on - strand, within PS417_00310 at 62.151 kb on - strand, within PS417_00310 at 62.238 kb on + strand, within PS417_00310 at 62.239 kb on - strand, within PS417_00310 at 62.239 kb on - strand, within PS417_00310 at 62.264 kb on - strand, within PS417_00310 at 62.264 kb on - strand, within PS417_00310 at 62.264 kb on - strand, within PS417_00310 at 62.344 kb on - strand, within PS417_00310 at 62.449 kb on + strand at 62.453 kb on + strand at 62.505 kb on + strand at 62.505 kb on + strand at 62.505 kb on + strand at 62.506 kb on - strand at 62.508 kb on + strand at 62.537 kb on - strand at 62.537 kb on - strand at 62.537 kb on - strand at 62.661 kb on + strand, within PS417_00315 at 62.816 kb on - strand, within PS417_00315 at 62.931 kb on + strand, within PS417_00315 at 63.124 kb on - strand, within PS417_00315 at 63.124 kb on - strand, within PS417_00315 at 63.171 kb on + strand, within PS417_00315 at 63.172 kb on - strand, within PS417_00315 at 63.234 kb on - strand, within PS417_00315 at 63.364 kb on - strand at 63.364 kb on - strand at 63.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 61,069 + PS417_00305 0.49 +0.6 61,069 + PS417_00305 0.49 -0.3 61,069 + PS417_00305 0.49 +0.5 61,070 - PS417_00305 0.49 -0.3 61,070 - PS417_00305 0.49 -0.7 61,070 - PS417_00305 0.49 -0.0 61,255 + PS417_00305 0.61 +0.9 61,255 + PS417_00305 0.61 +3.6 61,255 + PS417_00305 0.61 +0.9 61,255 + +1.6 61,256 - PS417_00305 0.61 +0.6 61,256 - PS417_00305 0.61 -0.1 61,447 + PS417_00305 0.73 -1.0 61,448 - PS417_00305 0.73 -0.1 61,471 + PS417_00305 0.74 -1.6 61,472 - PS417_00305 0.74 -0.2 61,475 + PS417_00305 0.75 -0.4 61,475 + PS417_00305 0.75 +0.3 61,517 - PS417_00305 0.77 -0.4 61,519 + PS417_00305 0.77 +1.2 61,520 - PS417_00305 0.77 -0.7 61,549 + PS417_00305 0.79 +0.2 61,550 - PS417_00305 0.79 -1.0 61,663 + PS417_00305 0.86 -0.0 61,994 - PS417_00310 0.17 -0.9 61,994 - PS417_00310 0.17 +4.1 62,151 - PS417_00310 0.45 +0.1 62,238 + PS417_00310 0.61 +0.6 62,239 - PS417_00310 0.61 -0.0 62,239 - PS417_00310 0.61 -0.3 62,264 - PS417_00310 0.66 -0.1 62,264 - PS417_00310 0.66 -0.3 62,264 - PS417_00310 0.66 +1.4 62,344 - PS417_00310 0.80 +2.6 62,449 + +0.1 62,453 + -0.6 62,505 + +1.4 62,505 + -0.3 62,505 + -0.6 62,506 - -0.1 62,508 + +2.4 62,537 - -0.2 62,537 - +1.0 62,537 - +0.7 62,661 + PS417_00315 0.20 +0.1 62,816 - PS417_00315 0.37 -0.4 62,931 + PS417_00315 0.50 +0.4 63,124 - PS417_00315 0.72 -1.3 63,124 - PS417_00315 0.72 -0.4 63,171 + PS417_00315 0.77 +0.1 63,172 - PS417_00315 0.77 +0.4 63,234 - PS417_00315 0.84 -0.4 63,364 - +0.5 63,364 - +0.1 63,364 - +0.7
Or see this region's nucleotide sequence