Strain Fitness in Pseudomonas simiae WCS417 around PS417_02930
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 666,969 | + | PS417_02920 | 0.75 | -0.0 | |
| 666,970 | - | PS417_02920 | 0.76 | +2.0 | |
| 666,970 | - | PS417_02920 | 0.76 | +0.9 | |
| 666,997 | + | PS417_02920 | 0.79 | -2.2 | |
| 666,998 | - | PS417_02920 | 0.79 | +0.1 | |
| 667,454 | + | PS417_02925 | 0.50 | -0.6 | |
| 667,455 | - | PS417_02925 | 0.50 | +0.4 | |
| 667,455 | - | PS417_02925 | 0.50 | +1.2 | |
| 667,455 | - | PS417_02925 | 0.50 | +1.1 | |
| 667,455 | - | PS417_02925 | 0.50 | -1.1 | |
| 667,588 | - | PS417_02925 | 0.72 | -0.2 | |
| 667,679 | - | PS417_02925 | 0.87 | -0.6 | |
| 667,708 | - | +0.4 | |||
| 667,848 | + | +0.0 | |||
| 667,848 | + | -2.0 | |||
| 667,911 | + | -0.2 | |||
| 670,704 | + | -0.3 | |||
| 670,705 | - | +0.6 | |||
| 670,705 | - | -0.1 | |||
| 670,705 | - | -0.1 | |||
| 670,705 | - | +0.8 | |||
| 670,721 | - | -0.3 | |||
| 670,724 | + | -0.1 | |||
| 670,725 | - | +0.8 |
Or see this region's nucleotide sequence