Strain Fitness in Pseudomonas simiae WCS417 around PS417_02910

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02900 and PS417_02905 overlap by 8 nucleotidesPS417_02905 and PS417_02910 overlap by 1 nucleotidesPS417_02910 and PS417_02915 overlap by 1 nucleotides PS417_02900: PS417_02900 - oxidoreductase, at 661,811 to 663,157 _02900 PS417_02905: PS417_02905 - precorrin isomerase, at 663,150 to 663,776 _02905 PS417_02910: PS417_02910 - precorrin-2 C20-methyltransferase, at 663,776 to 664,507 _02910 PS417_02915: PS417_02915 - precorrin-3B C17-methyltransferase, at 664,507 to 666,144 _02915 Position (kb) 663 664 665Strain fitness (log2 ratio) -1 0 1at 663.044 kb on + strandat 663.101 kb on - strandat 663.160 kb on - strandat 664.008 kb on - strand, within PS417_02910at 664.124 kb on + strand, within PS417_02910at 664.125 kb on - strand, within PS417_02910at 664.125 kb on - strand, within PS417_02910at 664.130 kb on + strand, within PS417_02910at 664.130 kb on + strand, within PS417_02910at 664.229 kb on + strand, within PS417_02910at 664.391 kb on + strand, within PS417_02910at 664.392 kb on - strand, within PS417_02910at 664.524 kb on + strandat 664.525 kb on - strandat 664.631 kb on - strandat 664.663 kb on + strandat 664.991 kb on + strandat 665.114 kb on - strand, within PS417_02915at 665.482 kb on + strand, within PS417_02915at 665.483 kb on - strand, within PS417_02915

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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663,044 + -0.2
663,101 - -0.8
663,160 - -0.1
664,008 - PS417_02910 0.32 -0.7
664,124 + PS417_02910 0.48 -1.5
664,125 - PS417_02910 0.48 -1.0
664,125 - PS417_02910 0.48 -0.8
664,130 + PS417_02910 0.48 -0.6
664,130 + PS417_02910 0.48 -1.2
664,229 + PS417_02910 0.62 -0.3
664,391 + PS417_02910 0.84 +0.5
664,392 - PS417_02910 0.84 +1.2
664,524 + -0.4
664,525 - -1.3
664,631 - +0.2
664,663 + -1.4
664,991 + -0.1
665,114 - PS417_02915 0.37 -1.3
665,482 + PS417_02915 0.60 -1.7
665,483 - PS417_02915 0.60 -0.3

Or see this region's nucleotide sequence