Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27545 and PS417_27550 are separated by 125 nucleotides PS417_27550 and PS417_27555 are separated by 96 nucleotides PS417_27555 and PS417_27560 are separated by 168 nucleotides PS417_27560 and PS417_27565 overlap by 4 nucleotides PS417_27565 and PS417_27570 are separated by 352 nucleotides
PS417_27545: PS417_27545 - glutathione S-transferase, at 5,943,207 to 5,943,866
_27545
PS417_27550: PS417_27550 - hypothetical protein, at 5,943,992 to 5,944,276
_27550
PS417_27555: PS417_27555 - DNA-binding protein, at 5,944,373 to 5,944,627
_27555
PS417_27560: PS417_27560 - adenylate cyclase, at 5,944,796 to 5,947,636
_27560
PS417_27565: PS417_27565 - nucleoside diphosphate kinase regulator, at 5,947,633 to 5,948,046
_27565
PS417_27570: PS417_27570 - frataxin, at 5,948,399 to 5,948,731
_27570
Position (kb) 5944
5945
5946
5947
5948 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 5943.829 kb on + strand at 5943.830 kb on - strand at 5943.830 kb on - strand at 5943.832 kb on + strand at 5943.833 kb on - strand at 5943.833 kb on - strand at 5943.833 kb on - strand at 5943.837 kb on - strand at 5943.837 kb on - strand at 5943.909 kb on - strand at 5943.910 kb on + strand at 5943.910 kb on + strand at 5943.910 kb on + strand at 5943.911 kb on - strand at 5943.911 kb on - strand at 5943.911 kb on - strand at 5944.274 kb on + strand at 5944.346 kb on + strand at 5944.355 kb on - strand at 5944.372 kb on + strand at 5944.372 kb on + strand at 5944.372 kb on + strand at 5944.372 kb on + strand at 5944.373 kb on - strand at 5944.373 kb on - strand at 5944.373 kb on - strand at 5944.373 kb on - strand at 5944.379 kb on + strand at 5944.379 kb on + strand at 5944.379 kb on + strand at 5944.379 kb on + strand at 5944.380 kb on - strand at 5944.380 kb on - strand at 5944.416 kb on + strand, within PS417_27555 at 5944.416 kb on + strand, within PS417_27555 at 5944.416 kb on + strand, within PS417_27555 at 5944.417 kb on - strand, within PS417_27555 at 5944.417 kb on - strand, within PS417_27555 at 5944.417 kb on - strand, within PS417_27555 at 5944.731 kb on - strand at 5944.994 kb on + strand at 5944.995 kb on - strand at 5944.995 kb on - strand at 5944.995 kb on - strand at 5945.087 kb on + strand, within PS417_27560 at 5945.378 kb on + strand, within PS417_27560 at 5945.379 kb on - strand, within PS417_27560 at 5945.456 kb on + strand, within PS417_27560 at 5945.456 kb on + strand, within PS417_27560 at 5945.457 kb on - strand, within PS417_27560 at 5945.471 kb on + strand, within PS417_27560 at 5945.652 kb on - strand, within PS417_27560 at 5945.652 kb on - strand, within PS417_27560 at 5945.744 kb on + strand, within PS417_27560 at 5945.744 kb on + strand, within PS417_27560 at 5945.745 kb on - strand, within PS417_27560 at 5945.745 kb on - strand, within PS417_27560 at 5945.756 kb on + strand, within PS417_27560 at 5945.774 kb on + strand, within PS417_27560 at 5945.775 kb on - strand, within PS417_27560 at 5945.829 kb on - strand, within PS417_27560 at 5945.968 kb on - strand, within PS417_27560 at 5946.014 kb on + strand, within PS417_27560 at 5946.014 kb on + strand, within PS417_27560 at 5946.014 kb on + strand, within PS417_27560 at 5946.015 kb on - strand, within PS417_27560 at 5946.015 kb on - strand, within PS417_27560 at 5946.091 kb on - strand, within PS417_27560 at 5946.091 kb on - strand, within PS417_27560 at 5946.243 kb on - strand, within PS417_27560 at 5946.243 kb on - strand, within PS417_27560 at 5946.243 kb on - strand, within PS417_27560 at 5946.426 kb on + strand, within PS417_27560 at 5946.426 kb on + strand, within PS417_27560 at 5946.427 kb on - strand, within PS417_27560 at 5946.556 kb on + strand, within PS417_27560 at 5946.714 kb on - strand, within PS417_27560 at 5946.858 kb on - strand, within PS417_27560 at 5946.921 kb on + strand, within PS417_27560 at 5946.922 kb on - strand, within PS417_27560 at 5946.922 kb on - strand at 5946.954 kb on - strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.266 kb on - strand, within PS417_27560 at 5947.266 kb on - strand, within PS417_27560 at 5947.266 kb on - strand, within PS417_27560 at 5947.275 kb on + strand, within PS417_27560 at 5947.275 kb on + strand, within PS417_27560 at 5947.275 kb on + strand, within PS417_27560 at 5947.276 kb on - strand, within PS417_27560 at 5947.352 kb on + strand, within PS417_27560 at 5947.352 kb on + strand, within PS417_27560 at 5947.395 kb on + strand at 5947.395 kb on + strand at 5947.399 kb on + strand at 5947.400 kb on - strand at 5947.400 kb on - strand at 5947.400 kb on - strand at 5947.409 kb on + strand at 5947.522 kb on - strand at 5947.578 kb on - strand at 5947.578 kb on - strand at 5948.321 kb on + strand at 5948.322 kb on - strand at 5948.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,943,829 + -0.0 5,943,830 - -1.1 5,943,830 - +0.8 5,943,832 + -0.4 5,943,833 - -1.7 5,943,833 - -0.8 5,943,833 - -0.7 5,943,837 - +0.8 5,943,837 - +0.0 5,943,909 - +0.2 5,943,910 + +0.7 5,943,910 + +0.6 5,943,910 + -0.1 5,943,911 - +0.2 5,943,911 - -1.9 5,943,911 - +0.6 5,944,274 + -0.4 5,944,346 + +0.4 5,944,355 - -1.7 5,944,372 + +1.6 5,944,372 + +0.4 5,944,372 + +0.1 5,944,372 + -0.3 5,944,373 - -0.1 5,944,373 - +1.9 5,944,373 - +0.9 5,944,373 - +0.1 5,944,379 + +0.3 5,944,379 + +0.3 5,944,379 + -0.7 5,944,379 + -0.6 5,944,380 - -0.1 5,944,380 - -0.2 5,944,416 + PS417_27555 0.17 +0.0 5,944,416 + PS417_27555 0.17 -1.3 5,944,416 + PS417_27555 0.17 +0.3 5,944,417 - PS417_27555 0.17 +0.0 5,944,417 - PS417_27555 0.17 -0.5 5,944,417 - PS417_27555 0.17 +0.2 5,944,731 - -0.8 5,944,994 + +0.3 5,944,995 - +0.4 5,944,995 - -1.1 5,944,995 - +0.3 5,945,087 + PS417_27560 0.10 +0.1 5,945,378 + PS417_27560 0.20 +0.7 5,945,379 - PS417_27560 0.21 +0.7 5,945,456 + PS417_27560 0.23 -2.4 5,945,456 + PS417_27560 0.23 -0.3 5,945,457 - PS417_27560 0.23 -0.9 5,945,471 + PS417_27560 0.24 -0.1 5,945,652 - PS417_27560 0.30 +0.4 5,945,652 - PS417_27560 0.30 -0.1 5,945,744 + PS417_27560 0.33 -0.4 5,945,744 + PS417_27560 0.33 +0.0 5,945,745 - PS417_27560 0.33 -0.1 5,945,745 - PS417_27560 0.33 +0.9 5,945,756 + PS417_27560 0.34 +0.3 5,945,774 + PS417_27560 0.34 +1.1 5,945,775 - PS417_27560 0.34 +0.2 5,945,829 - PS417_27560 0.36 -0.3 5,945,968 - PS417_27560 0.41 +7.7 5,946,014 + PS417_27560 0.43 +1.5 5,946,014 + PS417_27560 0.43 +0.7 5,946,014 + PS417_27560 0.43 -0.4 5,946,015 - PS417_27560 0.43 +0.3 5,946,015 - PS417_27560 0.43 -0.3 5,946,091 - PS417_27560 0.46 -0.0 5,946,091 - PS417_27560 0.46 +0.4 5,946,243 - PS417_27560 0.51 +0.4 5,946,243 - PS417_27560 0.51 +0.5 5,946,243 - PS417_27560 0.51 +1.4 5,946,426 + PS417_27560 0.57 -1.6 5,946,426 + PS417_27560 0.57 -0.1 5,946,427 - PS417_27560 0.57 -1.0 5,946,556 + PS417_27560 0.62 +0.1 5,946,714 - PS417_27560 0.68 +2.0 5,946,858 - PS417_27560 0.73 -1.1 5,946,921 + PS417_27560 0.75 -0.1 5,946,922 - PS417_27560 0.75 -1.0 5,946,922 - +0.4 5,946,954 - PS417_27560 0.76 -0.0 5,947,100 + PS417_27560 0.81 +0.4 5,947,100 + PS417_27560 0.81 -0.2 5,947,100 + PS417_27560 0.81 -0.5 5,947,100 + PS417_27560 0.81 +1.0 5,947,100 + PS417_27560 0.81 -0.2 5,947,100 + PS417_27560 0.81 +0.2 5,947,101 - PS417_27560 0.81 +1.1 5,947,101 - PS417_27560 0.81 -0.8 5,947,101 - PS417_27560 0.81 +0.8 5,947,101 - PS417_27560 0.81 +0.2 5,947,101 - PS417_27560 0.81 +0.6 5,947,101 - PS417_27560 0.81 -0.3 5,947,265 + PS417_27560 0.87 -0.4 5,947,265 + PS417_27560 0.87 +1.2 5,947,265 + PS417_27560 0.87 +0.5 5,947,265 + PS417_27560 0.87 -0.4 5,947,265 + PS417_27560 0.87 -0.1 5,947,265 + PS417_27560 0.87 +0.4 5,947,266 - PS417_27560 0.87 +0.3 5,947,266 - PS417_27560 0.87 -0.7 5,947,266 - PS417_27560 0.87 +0.6 5,947,275 + PS417_27560 0.87 +0.4 5,947,275 + PS417_27560 0.87 +1.2 5,947,275 + PS417_27560 0.87 +0.1 5,947,276 - PS417_27560 0.87 -0.3 5,947,352 + PS417_27560 0.90 +0.2 5,947,352 + PS417_27560 0.90 +0.8 5,947,395 + -0.7 5,947,395 + -0.2 5,947,399 + +0.7 5,947,400 - -0.6 5,947,400 - +0.0 5,947,400 - -0.4 5,947,409 + -0.3 5,947,522 - -0.1 5,947,578 - -0.9 5,947,578 - +0.5 5,948,321 + -0.3 5,948,322 - -0.3 5,948,352 - -0.3
Or see this region's nucleotide sequence