Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26600 and PS417_26605 overlap by 4 nucleotides PS417_26605 and PS417_26610 overlap by 8 nucleotides PS417_26610 and PS417_26615 overlap by 1 nucleotides PS417_26615 and PS417_26620 are separated by 0 nucleotides
PS417_26600: PS417_26600 - malonate decarboxylase subunit gamma, at 5,750,413 to 5,751,183
_26600
PS417_26605: PS417_26605 - malonate decarboxylase subunit beta, at 5,751,180 to 5,752,022
_26605
PS417_26610: PS417_26610 - malonate decarboxylase subunit delta, at 5,752,015 to 5,752,314
_26610
PS417_26615: PS417_26615 - triphosphoribosyl-dephospho-CoA synthase, at 5,752,314 to 5,753,147
_26615
PS417_26620: PS417_26620 - malonate decarboxylase subunit alpha, at 5,753,148 to 5,754,818
_26620
Position (kb) 5752
5753 Strain fitness (log2 ratio) -1
0
1
2
3 at 5751.071 kb on + strand, within PS417_26600 at 5751.072 kb on - strand, within PS417_26600 at 5751.072 kb on - strand, within PS417_26600 at 5751.094 kb on + strand, within PS417_26600 at 5751.095 kb on - strand, within PS417_26600 at 5751.199 kb on + strand at 5751.265 kb on + strand, within PS417_26605 at 5751.268 kb on + strand, within PS417_26605 at 5752.011 kb on + strand at 5752.255 kb on + strand, within PS417_26610 at 5752.255 kb on + strand at 5752.256 kb on - strand, within PS417_26610 at 5752.304 kb on - strand at 5752.419 kb on + strand, within PS417_26615 at 5752.419 kb on + strand, within PS417_26615 at 5752.420 kb on - strand, within PS417_26615 at 5752.420 kb on - strand at 5752.607 kb on + strand, within PS417_26615 at 5752.609 kb on + strand, within PS417_26615 at 5752.610 kb on - strand, within PS417_26615 at 5752.610 kb on - strand, within PS417_26615 at 5753.179 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,751,071 + PS417_26600 0.85 -0.0 5,751,072 - PS417_26600 0.85 -0.4 5,751,072 - PS417_26600 0.85 -0.1 5,751,094 + PS417_26600 0.88 -0.4 5,751,095 - PS417_26600 0.88 +0.5 5,751,199 + -0.6 5,751,265 + PS417_26605 0.10 -0.3 5,751,268 + PS417_26605 0.10 +0.6 5,752,011 + +1.9 5,752,255 + PS417_26610 0.80 +1.0 5,752,255 + +1.1 5,752,256 - PS417_26610 0.80 -0.1 5,752,304 - -0.1 5,752,419 + PS417_26615 0.13 +0.1 5,752,419 + PS417_26615 0.13 -0.6 5,752,420 - PS417_26615 0.13 -0.6 5,752,420 - +2.8 5,752,607 + PS417_26615 0.35 -0.6 5,752,609 + PS417_26615 0.35 +1.5 5,752,610 - PS417_26615 0.35 +0.1 5,752,610 - PS417_26615 0.35 -0.8 5,753,179 + +1.6
Or see this region's nucleotide sequence