Strain Fitness in Pseudomonas simiae WCS417 around PS417_02525

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02520 and PS417_02525 are separated by 93 nucleotidesPS417_02525 and PS417_02530 overlap by 1 nucleotides PS417_02520: PS417_02520 - chemotaxis protein, at 576,160 to 578,094 _02520 PS417_02525: PS417_02525 - iron ABC transporter permease, at 578,188 to 579,753 _02525 PS417_02530: PS417_02530 - iron ABC transporter substrate-binding protein, at 579,753 to 580,778 _02530 Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 577.239 kb on + strand, within PS417_02520at 577.240 kb on - strand, within PS417_02520at 577.529 kb on + strand, within PS417_02520at 577.530 kb on - strand, within PS417_02520at 577.758 kb on + strand, within PS417_02520at 577.758 kb on + strand, within PS417_02520at 577.842 kb on - strand, within PS417_02520at 578.092 kb on + strandat 578.093 kb on - strandat 578.222 kb on + strandat 578.261 kb on + strandat 578.262 kb on - strandat 578.383 kb on + strand, within PS417_02525at 578.384 kb on - strand, within PS417_02525at 578.384 kb on - strand, within PS417_02525at 578.555 kb on + strandat 578.556 kb on - strand, within PS417_02525at 578.586 kb on - strand, within PS417_02525at 578.586 kb on - strand, within PS417_02525at 578.601 kb on - strand, within PS417_02525at 578.601 kb on - strand, within PS417_02525at 578.601 kb on - strand, within PS417_02525at 578.615 kb on + strand, within PS417_02525at 578.831 kb on - strand, within PS417_02525at 578.831 kb on - strand, within PS417_02525at 578.831 kb on - strand, within PS417_02525at 578.897 kb on + strand, within PS417_02525at 578.897 kb on + strand, within PS417_02525at 578.897 kb on + strand, within PS417_02525at 579.010 kb on + strand, within PS417_02525at 579.010 kb on + strand, within PS417_02525at 579.093 kb on - strand, within PS417_02525at 579.093 kb on - strand, within PS417_02525at 579.105 kb on + strand, within PS417_02525at 579.153 kb on + strand, within PS417_02525at 579.153 kb on + strand, within PS417_02525at 579.153 kb on + strand, within PS417_02525at 579.154 kb on - strand, within PS417_02525at 579.154 kb on - strand, within PS417_02525at 579.154 kb on - strand, within PS417_02525at 579.170 kb on - strand, within PS417_02525at 579.566 kb on + strand, within PS417_02525at 579.586 kb on + strand, within PS417_02525at 579.629 kb on + strandat 579.629 kb on + strandat 580.039 kb on + strand, within PS417_02530at 580.039 kb on + strand, within PS417_02530at 580.039 kb on + strand, within PS417_02530at 580.040 kb on - strand, within PS417_02530at 580.090 kb on + strand, within PS417_02530at 580.093 kb on + strand, within PS417_02530at 580.093 kb on + strand, within PS417_02530at 580.093 kb on + strand, within PS417_02530at 580.094 kb on - strand, within PS417_02530at 580.162 kb on + strand, within PS417_02530at 580.414 kb on + strand, within PS417_02530at 580.414 kb on + strand, within PS417_02530at 580.414 kb on + strand, within PS417_02530at 580.426 kb on - strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.428 kb on + strand, within PS417_02530at 580.429 kb on - strand, within PS417_02530at 580.429 kb on - strand, within PS417_02530at 580.429 kb on - strand, within PS417_02530at 580.507 kb on + strand, within PS417_02530at 580.581 kb on + strand, within PS417_02530at 580.581 kb on + strand, within PS417_02530at 580.582 kb on - strand, within PS417_02530at 580.582 kb on - strand, within PS417_02530at 580.658 kb on - strand, within PS417_02530at 580.687 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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577,239 + PS417_02520 0.56 -0.2
577,240 - PS417_02520 0.56 -0.7
577,529 + PS417_02520 0.71 -0.4
577,530 - PS417_02520 0.71 -0.5
577,758 + PS417_02520 0.83 -0.1
577,758 + PS417_02520 0.83 -0.1
577,842 - PS417_02520 0.87 -0.2
578,092 + -0.5
578,093 - +0.4
578,222 + -1.1
578,261 + -2.1
578,262 - -0.2
578,383 + PS417_02525 0.12 -0.9
578,384 - PS417_02525 0.13 -1.6
578,384 - PS417_02525 0.13 -0.6
578,555 + +0.7
578,556 - PS417_02525 0.23 -0.5
578,586 - PS417_02525 0.25 -1.4
578,586 - PS417_02525 0.25 -0.8
578,601 - PS417_02525 0.26 -1.6
578,601 - PS417_02525 0.26 -1.1
578,601 - PS417_02525 0.26 -1.6
578,615 + PS417_02525 0.27 -0.7
578,831 - PS417_02525 0.41 -0.3
578,831 - PS417_02525 0.41 -1.0
578,831 - PS417_02525 0.41 +0.3
578,897 + PS417_02525 0.45 -1.4
578,897 + PS417_02525 0.45 +0.0
578,897 + PS417_02525 0.45 +0.9
579,010 + PS417_02525 0.52 -1.3
579,010 + PS417_02525 0.52 -2.6
579,093 - PS417_02525 0.58 -1.0
579,093 - PS417_02525 0.58 -1.2
579,105 + PS417_02525 0.59 -1.2
579,153 + PS417_02525 0.62 -0.8
579,153 + PS417_02525 0.62 -0.9
579,153 + PS417_02525 0.62 +0.6
579,154 - PS417_02525 0.62 -0.1
579,154 - PS417_02525 0.62 -2.0
579,154 - PS417_02525 0.62 -0.6
579,170 - PS417_02525 0.63 -1.3
579,566 + PS417_02525 0.88 -1.7
579,586 + PS417_02525 0.89 -1.2
579,629 + -0.1
579,629 + +1.8
580,039 + PS417_02530 0.28 -1.1
580,039 + PS417_02530 0.28 -0.7
580,039 + PS417_02530 0.28 -1.4
580,040 - PS417_02530 0.28 +1.6
580,090 + PS417_02530 0.33 -1.1
580,093 + PS417_02530 0.33 -0.7
580,093 + PS417_02530 0.33 -2.0
580,093 + PS417_02530 0.33 +0.3
580,094 - PS417_02530 0.33 -0.8
580,162 + PS417_02530 0.40 -1.4
580,414 + PS417_02530 0.64 -1.4
580,414 + PS417_02530 0.64 -0.3
580,414 + PS417_02530 0.64 -1.7
580,426 - PS417_02530 0.66 +1.2
580,428 + PS417_02530 0.66 -1.2
580,428 + PS417_02530 0.66 -3.2
580,428 + PS417_02530 0.66 -0.4
580,428 + PS417_02530 0.66 -1.4
580,429 - PS417_02530 0.66 -1.0
580,429 - PS417_02530 0.66 -0.5
580,429 - PS417_02530 0.66 +0.2
580,507 + PS417_02530 0.73 -1.9
580,581 + PS417_02530 0.81 -1.1
580,581 + PS417_02530 0.81 -1.5
580,582 - PS417_02530 0.81 -1.3
580,582 - PS417_02530 0.81 -2.7
580,658 - PS417_02530 0.88 -0.7
580,687 + -1.4

Or see this region's nucleotide sequence