Strain Fitness in Pseudomonas simiae WCS417 around PS417_00245

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00235 and PS417_00240 overlap by 4 nucleotidesPS417_00240 and PS417_00245 are separated by 102 nucleotidesPS417_00245 and PS417_00250 overlap by 4 nucleotidesPS417_00250 and PS417_00255 are separated by 35 nucleotidesPS417_00255 and PS417_00260 are separated by 194 nucleotides PS417_00235: PS417_00235 - HAD family hydrolase, at 45,878 to 46,537 _00235 PS417_00240: PS417_00240 - anhydrase, at 46,534 to 47,076 _00240 PS417_00245: PS417_00245 - oligopeptidase A, at 47,179 to 49,230 _00245 PS417_00250: PS417_00250 - DNA-binding protein, at 49,227 to 49,502 _00250 PS417_00255: PS417_00255 - hypothetical protein, at 49,538 to 49,741 _00255 PS417_00260: PS417_00260 - gluconate 2-dehydrogenase, at 49,936 to 50,688 _00260 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 46.218 kb on + strand, within PS417_00235at 46.218 kb on + strand, within PS417_00235at 46.218 kb on + strand, within PS417_00235at 46.219 kb on - strand, within PS417_00235at 46.288 kb on - strand, within PS417_00235at 46.360 kb on - strand, within PS417_00235at 46.468 kb on + strand, within PS417_00235at 46.580 kb on + strandat 46.595 kb on + strand, within PS417_00240at 46.654 kb on + strand, within PS417_00240at 46.654 kb on + strand, within PS417_00240at 46.654 kb on + strand, within PS417_00240at 46.654 kb on + strand, within PS417_00240at 46.654 kb on + strand, within PS417_00240at 46.655 kb on - strand, within PS417_00240at 46.655 kb on - strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 47.079 kb on + strandat 47.102 kb on - strandat 47.102 kb on - strandat 47.123 kb on + strandat 47.124 kb on - strandat 47.128 kb on - strandat 47.128 kb on - strandat 47.150 kb on + strandat 47.154 kb on + strandat 47.154 kb on + strandat 47.155 kb on - strandat 47.155 kb on - strandat 47.210 kb on - strandat 47.210 kb on - strandat 47.444 kb on - strand, within PS417_00245at 47.473 kb on + strand, within PS417_00245at 47.474 kb on - strand, within PS417_00245at 47.843 kb on - strand, within PS417_00245at 47.843 kb on - strand, within PS417_00245at 47.843 kb on - strand, within PS417_00245at 47.843 kb on - strand, within PS417_00245at 47.843 kb on - strand, within PS417_00245at 47.846 kb on - strand, within PS417_00245at 47.860 kb on + strand, within PS417_00245at 47.861 kb on - strand, within PS417_00245at 47.902 kb on + strand, within PS417_00245at 47.902 kb on + strand, within PS417_00245at 47.908 kb on - strand, within PS417_00245at 48.011 kb on - strand, within PS417_00245at 48.011 kb on - strand, within PS417_00245at 48.220 kb on + strand, within PS417_00245at 48.221 kb on - strand, within PS417_00245at 48.251 kb on - strand, within PS417_00245at 48.251 kb on - strand, within PS417_00245at 48.251 kb on - strand, within PS417_00245at 48.269 kb on + strand, within PS417_00245at 48.305 kb on - strand, within PS417_00245at 48.416 kb on - strand, within PS417_00245at 48.693 kb on + strand, within PS417_00245at 48.949 kb on + strand, within PS417_00245at 48.950 kb on - strand, within PS417_00245at 49.009 kb on + strand, within PS417_00245at 49.009 kb on + strand, within PS417_00245at 49.009 kb on + strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.015 kb on + strand, within PS417_00245at 49.016 kb on - strand, within PS417_00245at 49.016 kb on - strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strandat 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.247 kb on + strandat 49.250 kb on + strandat 49.500 kb on + strandat 49.539 kb on + strandat 49.540 kb on - strandat 49.540 kb on - strandat 49.800 kb on + strandat 49.839 kb on + strandat 49.840 kb on - strandat 49.840 kb on - strandat 49.840 kb on - strandat 49.891 kb on + strandat 49.892 kb on - strandat 49.892 kb on - strandat 50.104 kb on + strand, within PS417_00260at 50.104 kb on + strand, within PS417_00260at 50.105 kb on - strand, within PS417_00260at 50.219 kb on - strand, within PS417_00260at 50.219 kb on - strand, within PS417_00260

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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46,218 + PS417_00235 0.52 +0.2
46,218 + PS417_00235 0.52 -0.2
46,218 + PS417_00235 0.52 +1.2
46,219 - PS417_00235 0.52 -0.3
46,288 - PS417_00235 0.62 -0.8
46,360 - PS417_00235 0.73 +0.0
46,468 + PS417_00235 0.89 -1.0
46,580 + -0.3
46,595 + PS417_00240 0.11 +0.7
46,654 + PS417_00240 0.22 -0.4
46,654 + PS417_00240 0.22 -0.3
46,654 + PS417_00240 0.22 -0.4
46,654 + PS417_00240 0.22 -0.9
46,654 + PS417_00240 0.22 -0.3
46,655 - PS417_00240 0.22 +1.0
46,655 - PS417_00240 0.22 +0.6
46,658 + PS417_00240 0.23 -0.4
46,658 + PS417_00240 0.23 +1.2
46,658 + PS417_00240 0.23 +0.3
46,658 + PS417_00240 0.23 -0.4
46,658 + PS417_00240 0.23 +0.3
46,658 + PS417_00240 0.23 -0.2
46,659 - PS417_00240 0.23 +0.3
46,659 - PS417_00240 0.23 -0.4
46,659 - PS417_00240 0.23 +2.1
46,659 - PS417_00240 0.23 +0.3
46,659 - PS417_00240 0.23 -0.0
46,659 - PS417_00240 0.23 -1.4
46,659 - PS417_00240 0.23 -0.3
46,659 - PS417_00240 0.23 -0.9
46,659 - PS417_00240 0.23 -0.0
46,659 - PS417_00240 0.23 +0.0
46,659 - PS417_00240 0.23 -0.8
47,079 + +2.2
47,102 - +0.2
47,102 - +0.6
47,123 + +0.0
47,124 - +0.3
47,128 - -0.8
47,128 - -0.6
47,150 + +0.0
47,154 + -1.6
47,154 + -0.1
47,155 - +0.6
47,155 - -0.5
47,210 - -0.1
47,210 - +1.5
47,444 - PS417_00245 0.13 +0.1
47,473 + PS417_00245 0.14 +0.5
47,474 - PS417_00245 0.14 +0.5
47,843 - PS417_00245 0.32 +0.2
47,843 - PS417_00245 0.32 +0.5
47,843 - PS417_00245 0.32 -0.7
47,843 - PS417_00245 0.32 +0.8
47,843 - PS417_00245 0.32 +0.5
47,846 - PS417_00245 0.33 +1.0
47,860 + PS417_00245 0.33 +1.6
47,861 - PS417_00245 0.33 +1.4
47,902 + PS417_00245 0.35 +2.0
47,902 + PS417_00245 0.35 -0.1
47,908 - PS417_00245 0.36 +3.2
48,011 - PS417_00245 0.41 +0.7
48,011 - PS417_00245 0.41 -0.8
48,220 + PS417_00245 0.51 +1.1
48,221 - PS417_00245 0.51 +1.1
48,251 - PS417_00245 0.52 +0.5
48,251 - PS417_00245 0.52 +0.5
48,251 - PS417_00245 0.52 +0.3
48,269 + PS417_00245 0.53 +0.3
48,305 - PS417_00245 0.55 +0.3
48,416 - PS417_00245 0.60 +0.8
48,693 + PS417_00245 0.74 +0.2
48,949 + PS417_00245 0.86 +0.4
48,950 - PS417_00245 0.86 +0.3
49,009 + PS417_00245 0.89 -0.1
49,009 + PS417_00245 0.89 -0.2
49,009 + PS417_00245 0.89 -2.7
49,010 - PS417_00245 0.89 +0.3
49,010 - PS417_00245 0.89 -0.4
49,010 - PS417_00245 0.89 +5.1
49,010 - PS417_00245 0.89 +1.1
49,015 + PS417_00245 0.89 +0.1
49,016 - PS417_00245 0.90 +0.2
49,016 - PS417_00245 0.90 +0.3
49,017 + PS417_00245 0.90 +0.7
49,017 + PS417_00245 0.90 -0.1
49,017 + PS417_00245 0.90 -0.2
49,017 + PS417_00245 0.90 -0.9
49,017 + PS417_00245 0.90 -0.8
49,017 + PS417_00245 0.90 -0.3
49,017 + +1.6
49,017 + PS417_00245 0.90 -1.7
49,017 + PS417_00245 0.90 -0.3
49,018 - PS417_00245 0.90 +1.1
49,018 - PS417_00245 0.90 +1.7
49,018 - PS417_00245 0.90 +1.1
49,018 - PS417_00245 0.90 +0.4
49,018 - PS417_00245 0.90 +0.5
49,247 + -1.1
49,250 + +1.1
49,500 + +0.1
49,539 + -0.4
49,540 - +1.5
49,540 - +0.4
49,800 + +0.5
49,839 + -0.3
49,840 - +1.4
49,840 - -0.1
49,840 - -0.4
49,891 + -0.7
49,892 - +0.9
49,892 - +0.0
50,104 + PS417_00260 0.22 -0.1
50,104 + PS417_00260 0.22 -0.3
50,105 - PS417_00260 0.22 +0.1
50,219 - PS417_00260 0.38 +0.2
50,219 - PS417_00260 0.38 +0.1

Or see this region's nucleotide sequence