Strain Fitness in Pseudomonas simiae WCS417 around PS417_02205
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 496,810 | + | +0.0 | |||
| 496,811 | - | -0.2 | |||
| 496,863 | - | -0.6 | |||
| 496,863 | - | -0.4 | |||
| 496,863 | - | -0.2 | |||
| 496,863 | - | +2.4 | |||
| 496,870 | + | +0.0 | |||
| 496,873 | + | +0.1 | |||
| 496,874 | - | +1.0 | |||
| 496,941 | + | -0.1 | |||
| 496,981 | - | -0.2 | |||
| 497,005 | - | PS417_02205 | 0.10 | +0.4 | |
| 497,005 | - | PS417_02205 | 0.10 | -0.5 | |
| 497,016 | + | PS417_02205 | 0.12 | -0.2 | |
| 497,031 | + | PS417_02205 | 0.14 | -0.5 | |
| 497,031 | + | PS417_02205 | 0.14 | -1.5 | |
| 497,101 | - | PS417_02205 | 0.25 | -0.2 | |
| 497,151 | + | PS417_02205 | 0.33 | -0.6 | |
| 497,152 | - | PS417_02205 | 0.33 | +0.6 | |
| 497,166 | + | PS417_02205 | 0.35 | -0.9 | |
| 497,269 | - | PS417_02205 | 0.51 | -0.8 | |
| 497,269 | - | PS417_02205 | 0.51 | -0.4 | |
| 497,269 | - | PS417_02205 | 0.51 | -0.4 | |
| 497,269 | - | PS417_02205 | 0.51 | -0.6 | |
| 497,322 | + | PS417_02205 | 0.59 | -0.5 | |
| 497,323 | - | PS417_02205 | 0.59 | -1.1 | |
| 497,822 | - | -0.6 | |||
| 497,941 | - | PS417_02210 | 0.10 | +0.7 | |
| 497,941 | - | PS417_02210 | 0.10 | +0.9 |
Or see this region's nucleotide sequence