Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19060 and PS417_19065 overlap by 4 nucleotides PS417_19065 and PS417_19070 overlap by 12 nucleotides PS417_19070 and PS417_19075 are separated by 4 nucleotides
PS417_19060: PS417_19060 - NADPH:quinone oxidoreductase, at 4,124,278 to 4,125,258
_19060
PS417_19065: PS417_19065 - monooxygenase, at 4,125,255 to 4,125,593
_19065
PS417_19070: PS417_19070 - hypothetical protein, at 4,125,582 to 4,126,310
_19070
PS417_19075: PS417_19075 - ABC transporter ATP-binding protein, at 4,126,315 to 4,127,646
_19075
Position (kb) 4125
4126 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 4124.291 kb on + strand at 4124.292 kb on - strand at 4124.292 kb on - strand at 4124.295 kb on + strand at 4124.295 kb on + strand at 4124.295 kb on + strand at 4124.296 kb on - strand at 4124.296 kb on - strand at 4124.407 kb on + strand, within PS417_19060 at 4124.537 kb on - strand, within PS417_19060 at 4124.578 kb on + strand, within PS417_19060 at 4124.579 kb on - strand, within PS417_19060 at 4124.723 kb on + strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.873 kb on - strand, within PS417_19060 at 4124.873 kb on - strand, within PS417_19060 at 4125.098 kb on + strand, within PS417_19060 at 4125.099 kb on - strand, within PS417_19060 at 4125.148 kb on + strand, within PS417_19060 at 4125.522 kb on + strand, within PS417_19065 at 4125.660 kb on + strand, within PS417_19070 at 4125.674 kb on - strand, within PS417_19070 at 4125.688 kb on - strand, within PS417_19070 at 4125.945 kb on + strand, within PS417_19070 at 4125.945 kb on + strand, within PS417_19070 at 4125.946 kb on - strand, within PS417_19070 at 4125.947 kb on + strand at 4125.947 kb on + strand, within PS417_19070 at 4125.948 kb on - strand, within PS417_19070 at 4125.948 kb on - strand, within PS417_19070 at 4126.056 kb on + strand, within PS417_19070 at 4126.057 kb on - strand, within PS417_19070 at 4126.076 kb on - strand, within PS417_19070 at 4126.085 kb on + strand, within PS417_19070 at 4126.086 kb on - strand, within PS417_19070 at 4126.258 kb on + strand at 4126.259 kb on - strand at 4126.377 kb on + strand at 4126.378 kb on - strand at 4126.499 kb on - strand at 4126.509 kb on - strand, within PS417_19075 at 4126.509 kb on - strand, within PS417_19075
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 4,124,291 + -0.1 4,124,292 - +0.5 4,124,292 - +0.0 4,124,295 + +2.0 4,124,295 + +0.2 4,124,295 + -0.5 4,124,296 - -1.0 4,124,296 - +0.4 4,124,407 + PS417_19060 0.13 +1.0 4,124,537 - PS417_19060 0.26 +0.0 4,124,578 + PS417_19060 0.31 -1.8 4,124,579 - PS417_19060 0.31 +0.0 4,124,723 + PS417_19060 0.45 +0.5 4,124,724 - PS417_19060 0.45 -0.5 4,124,724 - PS417_19060 0.45 -2.0 4,124,724 - PS417_19060 0.45 -0.3 4,124,872 + PS417_19060 0.61 +0.2 4,124,872 + PS417_19060 0.61 -0.9 4,124,872 + PS417_19060 0.61 -0.3 4,124,873 - PS417_19060 0.61 -0.2 4,124,873 - PS417_19060 0.61 +0.2 4,125,098 + PS417_19060 0.84 +0.4 4,125,099 - PS417_19060 0.84 +0.3 4,125,148 + PS417_19060 0.89 +0.2 4,125,522 + PS417_19065 0.79 +2.1 4,125,660 + PS417_19070 0.11 -0.1 4,125,674 - PS417_19070 0.13 -0.6 4,125,688 - PS417_19070 0.15 +0.9 4,125,945 + PS417_19070 0.50 +0.5 4,125,945 + PS417_19070 0.50 -1.4 4,125,946 - PS417_19070 0.50 -1.0 4,125,947 + +1.6 4,125,947 + PS417_19070 0.50 -0.7 4,125,948 - PS417_19070 0.50 +0.7 4,125,948 - PS417_19070 0.50 -0.3 4,126,056 + PS417_19070 0.65 +0.5 4,126,057 - PS417_19070 0.65 +0.0 4,126,076 - PS417_19070 0.68 -0.1 4,126,085 + PS417_19070 0.69 -0.0 4,126,086 - PS417_19070 0.69 -0.6 4,126,258 + -0.3 4,126,259 - +0.0 4,126,377 + +0.2 4,126,378 - -0.5 4,126,499 - +0.2 4,126,509 - PS417_19075 0.15 -0.9 4,126,509 - PS417_19075 0.15 +6.1
Or see this region's nucleotide sequence