Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01885 and PS417_01890 are separated by 78 nucleotides PS417_01890 and PS417_01895 are separated by 27 nucleotides PS417_01895 and PS417_01900 are separated by 88 nucleotides
PS417_01885: PS417_01885 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 416,743 to 417,726
_01885
PS417_01890: PS417_01890 - TetR family transcriptional regulator, at 417,805 to 418,425
_01890
PS417_01895: PS417_01895 - poly(R)-hydroxyalkanoic acid synthase, at 418,453 to 420,135
_01895
PS417_01900: PS417_01900 - poly(3-hydroxyalkanoate) depolymerase, at 420,224 to 421,069
_01900
Position (kb) 418
419
420
421 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 417.621 kb on + strand, within PS417_01885 at 417.622 kb on - strand, within PS417_01885 at 417.806 kb on + strand at 417.807 kb on - strand at 417.824 kb on + strand at 417.825 kb on - strand at 417.868 kb on + strand, within PS417_01890 at 417.868 kb on + strand, within PS417_01890 at 417.868 kb on + strand, within PS417_01890 at 417.899 kb on + strand, within PS417_01890 at 417.900 kb on - strand, within PS417_01890 at 417.914 kb on - strand, within PS417_01890 at 418.152 kb on - strand, within PS417_01890 at 418.193 kb on + strand, within PS417_01890 at 418.194 kb on - strand, within PS417_01890 at 418.194 kb on - strand, within PS417_01890 at 418.277 kb on - strand, within PS417_01890 at 418.304 kb on + strand, within PS417_01890 at 418.304 kb on + strand, within PS417_01890 at 418.307 kb on + strand, within PS417_01890 at 418.436 kb on + strand at 418.436 kb on + strand at 418.437 kb on - strand at 418.437 kb on - strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.470 kb on - strand at 418.470 kb on - strand at 418.470 kb on - strand at 418.610 kb on + strand at 418.611 kb on - strand at 418.652 kb on + strand, within PS417_01895 at 418.652 kb on + strand, within PS417_01895 at 418.652 kb on + strand, within PS417_01895 at 418.754 kb on + strand, within PS417_01895 at 418.985 kb on + strand, within PS417_01895 at 418.985 kb on + strand, within PS417_01895 at 418.985 kb on + strand, within PS417_01895 at 418.985 kb on + strand, within PS417_01895 at 418.985 kb on + strand, within PS417_01895 at 418.986 kb on - strand, within PS417_01895 at 418.986 kb on - strand, within PS417_01895 at 418.986 kb on - strand, within PS417_01895 at 418.986 kb on - strand, within PS417_01895 at 419.162 kb on - strand, within PS417_01895 at 419.327 kb on + strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.356 kb on + strand at 419.356 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.450 kb on + strand, within PS417_01895 at 419.451 kb on - strand, within PS417_01895 at 419.451 kb on - strand, within PS417_01895 at 419.453 kb on + strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.495 kb on + strand, within PS417_01895 at 419.519 kb on + strand, within PS417_01895 at 419.519 kb on + strand, within PS417_01895 at 419.520 kb on - strand, within PS417_01895 at 419.846 kb on + strand, within PS417_01895 at 419.846 kb on + strand, within PS417_01895 at 419.847 kb on - strand, within PS417_01895 at 420.188 kb on + strand at 420.225 kb on + strand at 420.259 kb on + strand at 420.260 kb on - strand at 420.499 kb on - strand, within PS417_01900 at 420.622 kb on - strand, within PS417_01900 at 420.673 kb on + strand, within PS417_01900 at 420.793 kb on - strand, within PS417_01900 at 420.802 kb on - strand, within PS417_01900 at 421.046 kb on - strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 417,621 + PS417_01885 0.89 -0.9 417,622 - PS417_01885 0.89 +0.0 417,806 + -0.2 417,807 - -0.4 417,824 + -0.4 417,825 - -1.3 417,868 + PS417_01890 0.10 -0.1 417,868 + PS417_01890 0.10 -0.2 417,868 + PS417_01890 0.10 +0.3 417,899 + PS417_01890 0.15 -1.1 417,900 - PS417_01890 0.15 -0.7 417,914 - PS417_01890 0.18 +0.2 418,152 - PS417_01890 0.56 -0.0 418,193 + PS417_01890 0.62 -0.5 418,194 - PS417_01890 0.63 -0.1 418,194 - PS417_01890 0.63 -0.7 418,277 - PS417_01890 0.76 -0.1 418,304 + PS417_01890 0.80 +0.3 418,304 + PS417_01890 0.80 -0.4 418,307 + PS417_01890 0.81 +2.7 418,436 + +0.2 418,436 + +2.1 418,437 - -0.8 418,437 - +0.8 418,469 + +0.9 418,469 + +0.9 418,469 + +0.0 418,469 + -0.2 418,469 + -0.2 418,469 + -0.3 418,469 + +0.2 418,469 + +0.2 418,469 + -0.6 418,470 - -1.2 418,470 - +0.3 418,470 - +0.3 418,610 + -0.2 418,611 - -0.1 418,652 + PS417_01895 0.12 +0.5 418,652 + PS417_01895 0.12 -0.4 418,652 + PS417_01895 0.12 -0.1 418,754 + PS417_01895 0.18 +0.7 418,985 + PS417_01895 0.32 +0.3 418,985 + PS417_01895 0.32 +0.0 418,985 + PS417_01895 0.32 -1.1 418,985 + PS417_01895 0.32 +2.8 418,985 + PS417_01895 0.32 -0.7 418,986 - PS417_01895 0.32 +1.1 418,986 - PS417_01895 0.32 -0.1 418,986 - PS417_01895 0.32 +1.6 418,986 - PS417_01895 0.32 -0.7 419,162 - PS417_01895 0.42 -0.0 419,327 + PS417_01895 0.52 +2.4 419,328 - PS417_01895 0.52 +0.3 419,328 - PS417_01895 0.52 -1.4 419,328 - PS417_01895 0.52 -0.1 419,328 - PS417_01895 0.52 -0.2 419,356 + +2.2 419,356 + PS417_01895 0.54 -0.1 419,448 + PS417_01895 0.59 -0.4 419,448 + PS417_01895 0.59 +0.4 419,448 + PS417_01895 0.59 +0.4 419,450 + PS417_01895 0.59 -0.0 419,451 - PS417_01895 0.59 -0.1 419,451 - PS417_01895 0.59 +3.4 419,453 + PS417_01895 0.59 +0.4 419,454 - PS417_01895 0.59 +0.2 419,454 - PS417_01895 0.59 +0.4 419,454 - PS417_01895 0.59 +1.1 419,495 + PS417_01895 0.62 -0.4 419,519 + PS417_01895 0.63 +1.1 419,519 + PS417_01895 0.63 +0.3 419,520 - PS417_01895 0.63 +0.2 419,846 + PS417_01895 0.83 +0.2 419,846 + PS417_01895 0.83 -1.8 419,847 - PS417_01895 0.83 -0.1 420,188 + +0.0 420,225 + -0.1 420,259 + -0.1 420,260 - -0.1 420,499 - PS417_01900 0.33 +0.2 420,622 - PS417_01900 0.47 +0.6 420,673 + PS417_01900 0.53 -0.5 420,793 - PS417_01900 0.67 +0.2 420,802 - PS417_01900 0.68 -0.4 421,046 - -0.8 421,094 + -0.4 421,094 + -0.3 421,094 + +1.5 421,094 + -0.3 421,095 - -0.3 421,095 - -0.9 421,095 - -0.1 421,095 - +1.5 421,095 - -0.3 421,095 - -0.2 421,095 - -0.2
Or see this region's nucleotide sequence