Strain Fitness in Pseudomonas simiae WCS417 around PS417_00185

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00175 and PS417_00180 are separated by 136 nucleotidesPS417_00180 and PS417_00185 overlap by 1 nucleotidesPS417_00185 and PS417_00190 are separated by 110 nucleotides PS417_00175: PS417_00175 - CigR, at 37,312 to 37,752 _00175 PS417_00180: PS417_00180 - tryptophan synthase subunit alpha, at 37,889 to 38,698 _00180 PS417_00185: PS417_00185 - tryptophan synthase subunit beta, at 38,698 to 39,939 _00185 PS417_00190: PS417_00190 - LysR family transcriptional regulator, at 40,050 to 40,946 _00190 Position (kb) 38 39 40Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9at 37.826 kb on - strandat 37.826 kb on - strandat 37.894 kb on + strandat 37.894 kb on + strandat 37.894 kb on + strandat 37.895 kb on - strandat 38.175 kb on + strand, within PS417_00180at 38.294 kb on - strand, within PS417_00180at 38.395 kb on - strand, within PS417_00180at 38.729 kb on - strandat 38.729 kb on - strandat 38.940 kb on - strand, within PS417_00185at 39.354 kb on - strand, within PS417_00185at 39.513 kb on - strand, within PS417_00185at 39.513 kb on - strand, within PS417_00185at 39.513 kb on - strand, within PS417_00185at 39.646 kb on - strand, within PS417_00185at 39.917 kb on - strandat 39.917 kb on - strandat 40.525 kb on - strand, within PS417_00190at 40.728 kb on + strandat 40.731 kb on + strand, within PS417_00190at 40.731 kb on + strand, within PS417_00190at 40.732 kb on - strandat 40.927 kb on + strandat 40.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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37,826 - -0.1
37,826 - -1.1
37,894 + -0.4
37,894 + +0.1
37,894 + +0.6
37,895 - +0.2
38,175 + PS417_00180 0.35 +4.8
38,294 - PS417_00180 0.50 +8.0
38,395 - PS417_00180 0.62 +7.4
38,729 - -0.3
38,729 - -0.5
38,940 - PS417_00185 0.19 +9.1
39,354 - PS417_00185 0.53 +7.6
39,513 - PS417_00185 0.66 +7.3
39,513 - PS417_00185 0.66 +7.8
39,513 - PS417_00185 0.66 +7.7
39,646 - PS417_00185 0.76 +8.6
39,917 - +6.4
39,917 - +6.7
40,525 - PS417_00190 0.53 -0.1
40,728 + +2.3
40,731 + PS417_00190 0.76 -0.1
40,731 + PS417_00190 0.76 +0.3
40,732 - +0.8
40,927 + -0.2
40,928 - -0.3

Or see this region's nucleotide sequence