Strain Fitness in Pseudomonas simiae WCS417 around PS417_16090
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
|---|---|---|---|---|---|
| remove | |||||
| 3,526,579 | - | PS417_16085 | 0.20 | +1.7 | |
| 3,526,771 | - | PS417_16085 | 0.42 | +0.2 | |
| 3,527,085 | + | PS417_16085 | 0.78 | -0.3 | |
| 3,527,085 | + | PS417_16085 | 0.78 | +0.1 | |
| 3,527,085 | + | PS417_16085 | 0.78 | +0.9 | |
| 3,527,085 | + | PS417_16085 | 0.78 | +1.9 | |
| 3,527,086 | - | PS417_16085 | 0.78 | +0.1 | |
| 3,527,089 | - | PS417_16085 | 0.78 | +0.4 | |
| 3,527,459 | + | -0.3 | |||
| 3,527,463 | + | -0.7 | |||
| 3,527,478 | + | -0.4 | |||
| 3,527,479 | - | +0.5 | |||
| 3,527,524 | + | -1.7 | |||
| 3,528,021 | + | +1.3 | |||
| 3,528,022 | - | PS417_16090 | 0.88 | -0.3 | |
| 3,528,121 | - | -0.1 | |||
| 3,528,121 | - | -1.6 | |||
| 3,528,621 | + | PS417_16095 | 0.27 | +0.7 | |
| 3,528,756 | + | PS417_16095 | 0.34 | +0.2 | |
| 3,528,756 | + | PS417_16095 | 0.34 | +0.7 | |
| 3,528,757 | - | PS417_16095 | 0.34 | +0.2 |
Or see this region's nucleotide sequence