Strain Fitness in Pseudomonas simiae WCS417 around PS417_15285
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X |
---|---|---|---|---|---|
remove | |||||
3,352,246 | + | PS417_15275 | 0.64 | -0.8 | |
3,352,710 | - | -0.4 | |||
3,352,883 | + | PS417_15280 | 0.34 | +1.2 | |
3,353,157 | + | +0.3 | |||
3,353,158 | - | -0.2 | |||
3,353,235 | + | +0.7 | |||
3,353,350 | + | PS417_15285 | 0.11 | -0.5 | |
3,354,385 | - | -0.8 | |||
3,354,385 | - | -0.3 | |||
3,354,473 | + | PS417_15290 | 0.48 | +3.6 | |
3,354,473 | + | PS417_15290 | 0.48 | -0.3 | |
3,354,474 | - | PS417_15290 | 0.49 | +1.2 | |
3,354,545 | + | -0.3 | |||
3,354,545 | + | -0.1 | |||
3,354,546 | - | +0.9 | |||
3,354,887 | - | PS417_15295 | 0.20 | +0.2 | |
3,355,042 | + | PS417_15295 | 0.30 | +5.2 | |
3,355,045 | + | -0.7 | |||
3,355,046 | - | PS417_15295 | 0.30 | -0.5 |
Or see this region's nucleotide sequence