Strain Fitness in Pseudomonas simiae WCS417 around PS417_10235

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,187,395	+				+0.1
2,187,464	+				-0.4
2,187,465	-				-0.3
2,187,465	-				+1.1
2,187,491	+				-0.1
2,187,497	+				-0.3
2,187,497	+				-0.5
2,187,500	+				-0.1
2,187,501	-				-0.3
2,187,537	+				-0.8
2,187,552	+				+0.9
2,187,553	-				+0.1
2,187,594	+				-1.7
2,187,663	+				-0.8
2,187,664	-				-0.6
2,187,702	+				-1.1
2,187,702	+				-0.1
2,187,706	+				+2.3
2,187,707	-				-0.2
2,187,707	-				+5.0
2,187,734	-				-0.1
2,187,797	+				+0.1
2,187,797	+				-0.9
2,187,798	-				-0.5
2,187,848	+				+1.1
2,187,848	+				+0.1
2,187,881	+				+1.3
2,187,970	-				-0.1
2,188,258	+				-0.1
2,188,300	-				-0.4
2,188,300	-				-0.3
2,188,364	+				+0.2
2,188,364	+				-2.3
2,188,519	-		PS417_10235	0.33	+0.2
2,188,519	-		PS417_10235	0.33	+0.6
2,188,522	+		PS417_10235	0.34	+0.2
2,188,522	+		PS417_10235	0.34	-0.5
2,188,522	+		PS417_10235	0.34	+0.0
2,188,522	+		PS417_10235	0.34	-0.4
2,188,559	+		PS417_10235	0.42	-0.3
2,188,591	+		PS417_10235	0.48	+0.9
2,188,592	-		PS417_10235	0.49	+2.8
2,188,592	-		PS417_10235	0.49	-1.3
2,188,592	-		PS417_10235	0.49	-0.2
2,188,664	+		PS417_10235	0.64	-0.4
2,188,664	+		PS417_10235	0.64	+0.6
2,188,692	+		PS417_10235	0.69	-0.6
2,188,693	-		PS417_10235	0.70	+2.6
2,188,693	-		PS417_10235	0.70	-0.6
2,188,877	-				+0.1
2,188,934	+				-0.4
2,188,935	-				+0.1
2,188,978	+				-0.9
2,188,978	+				-0.1
2,188,978	+				+0.2
2,189,011	+				-0.2
2,189,011	+				-0.7
2,189,069	+				+0.1
2,189,069	+				-1.1
2,189,070	-				-0.1
2,189,070	-				+0.1
2,189,070	-				+0.4
2,189,070	-				-0.1
2,189,080	+				-0.5
2,189,385	+		PS417_10240	0.45	-0.6
2,189,386	-		PS417_10240	0.45	+0.4
2,189,387	+		PS417_10240	0.45	+0.9
2,189,659	+				+0.6
2,189,660	-		PS417_10240	0.85	-0.8
2,189,660	-		PS417_10240	0.85	-0.4
2,189,660	-		PS417_10240	0.85	-0.4
2,189,789	+				+1.2
2,189,789	+				+0.7
2,189,789	+				+0.4
2,189,790	-				+0.0
2,189,790	-				+1.2
2,189,796	-				+1.6
2,189,796	-				+1.1
2,189,833	+		PS417_10245	0.11	-0.3