Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09065 and PS417_09070 are separated by 203 nucleotides PS417_09070 and PS417_09075 are separated by 114 nucleotides
PS417_09065: PS417_09065 - short-chain dehydrogenase, at 1,973,123 to 1,973,884
_09065
PS417_09070: PS417_09070 - GntR family transcriptional regulator, at 1,974,088 to 1,975,500
_09070
PS417_09075: PS417_09075 - chemotaxis protein, at 1,975,615 to 1,977,582
_09075
Position (kb) 1974
1975
1976 Strain fitness (log2 ratio) -1
0
1
2 at 1973.122 kb on + strand at 1973.123 kb on - strand at 1973.123 kb on - strand at 1973.123 kb on - strand at 1973.366 kb on + strand at 1973.367 kb on - strand, within PS417_09065 at 1973.587 kb on + strand, within PS417_09065 at 1973.587 kb on + strand, within PS417_09065 at 1973.587 kb on + strand, within PS417_09065 at 1973.587 kb on + strand, within PS417_09065 at 1973.588 kb on - strand, within PS417_09065 at 1973.701 kb on + strand, within PS417_09065 at 1973.701 kb on + strand at 1973.882 kb on + strand at 1973.882 kb on + strand at 1974.119 kb on + strand at 1974.222 kb on + strand at 1974.461 kb on - strand, within PS417_09070 at 1974.461 kb on - strand, within PS417_09070 at 1974.508 kb on + strand, within PS417_09070 at 1974.508 kb on + strand, within PS417_09070 at 1974.509 kb on - strand, within PS417_09070 at 1974.994 kb on + strand, within PS417_09070 at 1974.994 kb on + strand, within PS417_09070 at 1974.995 kb on - strand, within PS417_09070 at 1975.037 kb on + strand, within PS417_09070 at 1975.043 kb on - strand, within PS417_09070 at 1975.159 kb on + strand, within PS417_09070 at 1975.212 kb on + strand, within PS417_09070 at 1975.213 kb on - strand, within PS417_09070 at 1975.269 kb on + strand, within PS417_09070 at 1975.269 kb on + strand, within PS417_09070 at 1975.296 kb on - strand, within PS417_09070 at 1975.498 kb on + strand at 1975.689 kb on - strand at 1975.794 kb on - strand at 1975.944 kb on - strand, within PS417_09075 at 1975.944 kb on - strand, within PS417_09075 at 1976.207 kb on + strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand at 1976.208 kb on - strand, within PS417_09075 at 1976.208 kb on - strand, within PS417_09075 at 1976.390 kb on - strand, within PS417_09075 at 1976.399 kb on + strand, within PS417_09075 at 1976.476 kb on + strand, within PS417_09075
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 1,973,122 + +0.9 1,973,123 - -0.3 1,973,123 - +0.3 1,973,123 - -0.0 1,973,366 + +0.6 1,973,367 - PS417_09065 0.32 -0.0 1,973,587 + PS417_09065 0.61 -0.6 1,973,587 + PS417_09065 0.61 -0.4 1,973,587 + PS417_09065 0.61 -0.2 1,973,587 + PS417_09065 0.61 -1.4 1,973,588 - PS417_09065 0.61 -0.3 1,973,701 + PS417_09065 0.76 -0.1 1,973,701 + -0.9 1,973,882 + -0.2 1,973,882 + -0.2 1,974,119 + -1.4 1,974,222 + -0.2 1,974,461 - PS417_09070 0.26 -1.4 1,974,461 - PS417_09070 0.26 -0.2 1,974,508 + PS417_09070 0.30 -1.5 1,974,508 + PS417_09070 0.30 -0.2 1,974,509 - PS417_09070 0.30 -0.4 1,974,994 + PS417_09070 0.64 -0.5 1,974,994 + PS417_09070 0.64 -0.3 1,974,995 - PS417_09070 0.64 +0.2 1,975,037 + PS417_09070 0.67 -1.0 1,975,043 - PS417_09070 0.68 -0.4 1,975,159 + PS417_09070 0.76 -0.1 1,975,212 + PS417_09070 0.80 -0.7 1,975,213 - PS417_09070 0.80 -1.0 1,975,269 + PS417_09070 0.84 -0.2 1,975,269 + PS417_09070 0.84 -0.3 1,975,296 - PS417_09070 0.85 -0.0 1,975,498 + -0.0 1,975,689 - -0.9 1,975,794 - +1.1 1,975,944 - PS417_09075 0.17 +1.1 1,975,944 - PS417_09075 0.17 -0.2 1,976,207 + PS417_09075 0.30 -0.5 1,976,208 - PS417_09075 0.30 -0.5 1,976,208 - PS417_09075 0.30 +0.2 1,976,208 - PS417_09075 0.30 -0.3 1,976,208 - +2.0 1,976,208 - PS417_09075 0.30 -1.0 1,976,208 - PS417_09075 0.30 -0.4 1,976,390 - PS417_09075 0.39 -0.0 1,976,399 + PS417_09075 0.40 +1.0 1,976,476 + PS417_09075 0.44 -0.2
Or see this region's nucleotide sequence