Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05260 and PS417_05265 are separated by 10 nucleotides PS417_05265 and PS417_05270 are separated by 42 nucleotides PS417_05270 and PS417_05275 are separated by 13 nucleotides PS417_05275 and PS417_05285 are separated by 87 nucleotides
PS417_05260: PS417_05260 - MFS transporter, at 1,167,218 to 1,168,558
_05260
PS417_05265: PS417_05265 - short-chain dehydrogenase, at 1,168,569 to 1,169,330
_05265
PS417_05270: PS417_05270 - 3-oxoacyl-ACP reductase, at 1,169,373 to 1,170,122
_05270
PS417_05275: PS417_05275 - hypothetical protein, at 1,170,136 to 1,170,429
_05275
PS417_05285: PS417_05285 - cobalamin biosynthesis protein CobW, at 1,170,517 to 1,171,491
_05285
Position (kb) 1169
1170
1171 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1168.557 kb on - strand at 1168.636 kb on - strand at 1168.668 kb on + strand, within PS417_05265 at 1168.672 kb on - strand, within PS417_05265 at 1169.001 kb on + strand, within PS417_05265 at 1169.370 kb on + strand at 1169.371 kb on - strand at 1169.803 kb on + strand, within PS417_05270 at 1169.803 kb on + strand, within PS417_05270 at 1169.803 kb on + strand, within PS417_05270 at 1169.804 kb on - strand, within PS417_05270 at 1169.804 kb on - strand, within PS417_05270 at 1169.804 kb on - strand, within PS417_05270 at 1169.804 kb on - strand, within PS417_05270 at 1169.804 kb on - strand, within PS417_05270 at 1169.807 kb on + strand, within PS417_05270 at 1169.807 kb on + strand, within PS417_05270 at 1169.808 kb on - strand, within PS417_05270 at 1169.808 kb on - strand, within PS417_05270 at 1170.131 kb on + strand at 1170.132 kb on - strand at 1170.428 kb on - strand at 1170.428 kb on - strand at 1170.489 kb on + strand at 1170.656 kb on + strand, within PS417_05285 at 1170.656 kb on + strand, within PS417_05285 at 1170.656 kb on + strand, within PS417_05285 at 1170.657 kb on - strand, within PS417_05285 at 1170.687 kb on - strand, within PS417_05285 at 1170.687 kb on - strand, within PS417_05285
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 1,168,557 - -0.3 1,168,636 - -1.2 1,168,668 + PS417_05265 0.13 -0.3 1,168,672 - PS417_05265 0.14 +0.2 1,169,001 + PS417_05265 0.57 +1.8 1,169,370 + +0.6 1,169,371 - -0.2 1,169,803 + PS417_05270 0.57 +1.0 1,169,803 + PS417_05270 0.57 +0.0 1,169,803 + PS417_05270 0.57 +0.4 1,169,804 - PS417_05270 0.57 +0.7 1,169,804 - PS417_05270 0.57 +0.8 1,169,804 - PS417_05270 0.57 -1.2 1,169,804 - PS417_05270 0.57 +0.3 1,169,804 - PS417_05270 0.57 +1.5 1,169,807 + PS417_05270 0.58 -0.7 1,169,807 + PS417_05270 0.58 +4.7 1,169,808 - PS417_05270 0.58 -0.2 1,169,808 - PS417_05270 0.58 -1.0 1,170,131 + -0.6 1,170,132 - -0.2 1,170,428 - -1.0 1,170,428 - -1.2 1,170,489 + -0.1 1,170,656 + PS417_05285 0.14 +0.6 1,170,656 + PS417_05285 0.14 -0.1 1,170,656 + PS417_05285 0.14 -0.5 1,170,657 - PS417_05285 0.14 +0.7 1,170,687 - PS417_05285 0.17 +0.4 1,170,687 - PS417_05285 0.17 -1.2
Or see this region's nucleotide sequence