Strain Fitness in Pseudomonas simiae WCS417 around PS417_17470
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X |
---|---|---|---|---|---|
remove | |||||
3,815,855 | + | +0.0 | |||
3,815,855 | + | -0.6 | |||
3,815,856 | - | +0.2 | |||
3,815,856 | - | -0.6 | |||
3,816,660 | - | -1.0 | |||
3,817,022 | + | PS417_17470 | 0.41 | -0.9 | |
3,817,022 | + | PS417_17470 | 0.41 | -0.4 | |
3,817,023 | - | PS417_17470 | 0.41 | +1.2 | |
3,817,739 | + | PS417_17475 | 0.28 | -0.1 | |
3,818,100 | - | PS417_17475 | 0.57 | +0.2 | |
3,818,155 | - | PS417_17475 | 0.61 | +0.0 |
Or see this region's nucleotide sequence