Strain Fitness in Pseudomonas simiae WCS417 around PS417_15770
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X |
|---|---|---|---|---|---|
| remove | |||||
| 3,457,321 | + | PS417_15765 | 0.62 | -0.7 | |
| 3,457,322 | - | PS417_15765 | 0.62 | -0.1 | |
| 3,457,322 | - | PS417_15765 | 0.62 | -0.1 | |
| 3,457,368 | - | PS417_15765 | 0.70 | +0.3 | |
| 3,457,390 | - | PS417_15765 | 0.74 | +0.2 | |
| 3,457,404 | + | PS417_15765 | 0.77 | +0.4 | |
| 3,457,404 | + | PS417_15765 | 0.77 | +0.3 | |
| 3,457,461 | - | PS417_15765 | 0.87 | -0.7 | |
| 3,457,594 | + | -0.0 | |||
| 3,457,610 | + | -0.2 | |||
| 3,457,610 | + | +0.2 | |||
| 3,457,610 | + | -1.3 | |||
| 3,457,611 | - | -0.1 | |||
| 3,457,611 | - | -0.0 | |||
| 3,458,021 | - | PS417_15770 | 0.62 | -0.9 | |
| 3,458,221 | + | +0.9 | |||
| 3,458,230 | + | +0.1 | |||
| 3,458,230 | + | -0.1 | |||
| 3,458,230 | + | -0.6 | |||
| 3,458,791 | - | PS417_15775 | 0.30 | -0.1 | |
| 3,458,791 | - | PS417_15775 | 0.30 | -0.6 | |
| 3,458,934 | + | PS417_15775 | 0.42 | -0.9 | |
| 3,458,934 | + | PS417_15775 | 0.42 | -0.5 |
Or see this region's nucleotide sequence