Strain Fitness in Pseudomonas simiae WCS417 around PS417_15290
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X |
|---|---|---|---|---|---|
| remove | |||||
| 3,354,385 | - | +0.2 | |||
| 3,354,385 | - | +0.1 | |||
| 3,354,473 | + | PS417_15290 | 0.48 | -0.3 | |
| 3,354,473 | + | PS417_15290 | 0.48 | -1.3 | |
| 3,354,474 | - | PS417_15290 | 0.49 | -1.5 | |
| 3,354,545 | + | -0.1 | |||
| 3,354,545 | + | -0.1 | |||
| 3,354,546 | - | +0.4 | |||
| 3,354,887 | - | PS417_15295 | 0.20 | +0.1 | |
| 3,355,042 | + | PS417_15295 | 0.30 | -1.0 | |
| 3,355,045 | + | -0.2 | |||
| 3,355,046 | - | PS417_15295 | 0.30 | +0.6 | |
| 3,355,446 | + | PS417_15295 | 0.56 | -0.2 |
Or see this region's nucleotide sequence