Strain Fitness in Pseudomonas simiae WCS417 around PS417_13850
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X |
|---|---|---|---|---|---|
| remove | |||||
| 3,041,481 | + | PS417_13840 | 0.89 | -0.1 | |
| 3,041,482 | - | PS417_13840 | 0.89 | -1.3 | |
| 3,041,482 | - | PS417_13840 | 0.89 | -0.0 | |
| 3,041,614 | + | +0.1 | |||
| 3,043,006 | + | +1.9 | |||
| 3,043,137 | + | PS417_13850 | 0.61 | -0.4 | |
| 3,043,138 | - | PS417_13850 | 0.61 | -0.5 | |
| 3,043,141 | + | PS417_13850 | 0.61 | -0.7 | |
| 3,043,141 | + | PS417_13850 | 0.61 | -0.5 | |
| 3,043,142 | - | PS417_13850 | 0.61 | +0.6 | |
| 3,043,142 | - | PS417_13850 | 0.61 | -0.1 | |
| 3,043,178 | + | PS417_13850 | 0.65 | +0.0 | |
| 3,043,378 | + | PS417_13850 | 0.82 | -1.0 | |
| 3,043,591 | + | +1.1 | |||
| 3,043,592 | - | +0.1 | |||
| 3,044,401 | + | PS417_13855 | 0.69 | -0.4 |
Or see this region's nucleotide sequence