Strain Fitness in Pseudomonas simiae WCS417 around PS417_05600

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05595 and PS417_05600 are separated by 435 nucleotidesPS417_05600 and PS417_05605 are separated by 77 nucleotidesPS417_05605 and PS417_05610 are separated by 69 nucleotides PS417_05595: PS417_05595 - ornithine carbamoyltransferase, at 1,259,118 to 1,260,038 _05595 PS417_05600: PS417_05600 - dehydrogenase, at 1,260,474 to 1,262,582 _05600 PS417_05605: PS417_05605 - glutaredoxin, at 1,262,660 to 1,262,998 _05605 PS417_05610: PS417_05610 - bacterioferritin, at 1,263,068 to 1,263,538 _05610 Position (kb) 1260 1261 1262 1263Strain fitness (log2 ratio) -1 0 1 2at 1259.483 kb on - strand, within PS417_05595at 1259.535 kb on + strand, within PS417_05595at 1259.535 kb on + strand, within PS417_05595at 1259.535 kb on + strand, within PS417_05595at 1259.535 kb on + strand, within PS417_05595at 1259.535 kb on + strand, within PS417_05595at 1259.536 kb on - strand, within PS417_05595at 1259.536 kb on - strand, within PS417_05595at 1259.536 kb on - strand, within PS417_05595at 1259.536 kb on - strand, within PS417_05595at 1259.539 kb on + strand, within PS417_05595at 1259.539 kb on + strand, within PS417_05595at 1259.539 kb on + strand, within PS417_05595at 1259.539 kb on + strand, within PS417_05595at 1259.539 kb on + strand, within PS417_05595at 1259.540 kb on - strand, within PS417_05595at 1259.540 kb on - strand, within PS417_05595at 1259.540 kb on - strand, within PS417_05595at 1259.543 kb on + strand, within PS417_05595at 1259.544 kb on - strand, within PS417_05595at 1259.544 kb on - strand, within PS417_05595at 1259.544 kb on - strand, within PS417_05595at 1259.544 kb on - strand, within PS417_05595at 1259.544 kb on - strand, within PS417_05595at 1259.544 kb on - strand, within PS417_05595at 1259.544 kb on - strandat 1259.727 kb on - strand, within PS417_05595at 1259.934 kb on + strandat 1260.042 kb on + strandat 1260.043 kb on - strandat 1260.087 kb on - strandat 1260.087 kb on - strandat 1260.087 kb on - strandat 1260.137 kb on + strandat 1260.158 kb on - strandat 1260.175 kb on + strandat 1260.263 kb on + strandat 1260.263 kb on + strandat 1260.458 kb on + strandat 1260.459 kb on - strandat 1260.461 kb on - strandat 1260.846 kb on + strand, within PS417_05600at 1260.846 kb on + strand, within PS417_05600at 1260.847 kb on - strand, within PS417_05600at 1260.847 kb on - strand, within PS417_05600at 1260.925 kb on - strand, within PS417_05600at 1260.933 kb on + strand, within PS417_05600at 1261.028 kb on + strand, within PS417_05600at 1261.028 kb on + strand, within PS417_05600at 1261.028 kb on + strand, within PS417_05600at 1261.188 kb on - strand, within PS417_05600at 1261.368 kb on + strand, within PS417_05600at 1261.563 kb on + strand, within PS417_05600at 1261.576 kb on + strand, within PS417_05600at 1261.577 kb on - strand, within PS417_05600at 1261.577 kb on - strand, within PS417_05600at 1261.577 kb on - strand, within PS417_05600at 1261.734 kb on + strand, within PS417_05600at 1261.734 kb on + strand, within PS417_05600at 1261.734 kb on + strand, within PS417_05600at 1261.734 kb on + strand, within PS417_05600at 1261.734 kb on + strand, within PS417_05600at 1261.735 kb on - strand, within PS417_05600at 1261.735 kb on - strand, within PS417_05600at 1261.735 kb on - strand, within PS417_05600at 1261.820 kb on + strand, within PS417_05600at 1261.821 kb on - strand, within PS417_05600at 1261.821 kb on - strand, within PS417_05600at 1261.821 kb on - strand, within PS417_05600at 1261.835 kb on + strand, within PS417_05600at 1262.004 kb on + strand, within PS417_05600at 1262.004 kb on + strand, within PS417_05600at 1262.005 kb on - strand, within PS417_05600at 1262.249 kb on + strand, within PS417_05600at 1262.249 kb on + strand, within PS417_05600at 1262.249 kb on + strand, within PS417_05600at 1262.249 kb on + strand, within PS417_05600at 1262.249 kb on + strand, within PS417_05600at 1262.249 kb on + strand, within PS417_05600at 1262.249 kb on + strand, within PS417_05600at 1262.250 kb on - strand, within PS417_05600at 1262.250 kb on - strand, within PS417_05600at 1262.253 kb on + strand, within PS417_05600at 1262.253 kb on + strand, within PS417_05600at 1262.254 kb on - strand, within PS417_05600at 1262.570 kb on - strandat 1262.606 kb on - strandat 1263.010 kb on + strandat 1263.070 kb on - strandat 1263.089 kb on + strandat 1263.089 kb on + strandat 1263.089 kb on + strandat 1263.089 kb on + strandat 1263.089 kb on + strandat 1263.089 kb on + strandat 1263.093 kb on + strandat 1263.405 kb on + strand, within PS417_05610at 1263.406 kb on - strand, within PS417_05610at 1263.444 kb on + strand, within PS417_05610at 1263.444 kb on + strand, within PS417_05610at 1263.445 kb on - strand, within PS417_05610at 1263.445 kb on - strand, within PS417_05610at 1263.445 kb on - strand, within PS417_05610at 1263.466 kb on - strand, within PS417_05610at 1263.557 kb on + strandat 1263.560 kb on + strandat 1263.560 kb on + strandat 1263.560 kb on + strandat 1263.560 kb on + strandat 1263.569 kb on - strandat 1263.570 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,259,483 - PS417_05595 0.40 -0.7
1,259,535 + PS417_05595 0.45 -0.9
1,259,535 + PS417_05595 0.45 +0.1
1,259,535 + PS417_05595 0.45 -0.1
1,259,535 + PS417_05595 0.45 +0.2
1,259,535 + PS417_05595 0.45 -0.0
1,259,536 - PS417_05595 0.45 +0.6
1,259,536 - PS417_05595 0.45 +0.1
1,259,536 - PS417_05595 0.45 +0.1
1,259,536 - PS417_05595 0.45 -0.4
1,259,539 + PS417_05595 0.46 +0.2
1,259,539 + PS417_05595 0.46 -0.2
1,259,539 + PS417_05595 0.46 -0.1
1,259,539 + PS417_05595 0.46 -0.5
1,259,539 + PS417_05595 0.46 +0.1
1,259,540 - PS417_05595 0.46 +1.2
1,259,540 - PS417_05595 0.46 -1.2
1,259,540 - PS417_05595 0.46 +0.3
1,259,543 + PS417_05595 0.46 -0.5
1,259,544 - PS417_05595 0.46 +0.1
1,259,544 - PS417_05595 0.46 -1.0
1,259,544 - PS417_05595 0.46 -0.8
1,259,544 - PS417_05595 0.46 +0.3
1,259,544 - PS417_05595 0.46 -0.2
1,259,544 - PS417_05595 0.46 -0.1
1,259,544 - -1.3
1,259,727 - PS417_05595 0.66 -0.1
1,259,934 + +0.1
1,260,042 + -0.2
1,260,043 - +2.4
1,260,087 - -0.9
1,260,087 - -0.1
1,260,087 - +0.1
1,260,137 + +0.9
1,260,158 - +0.7
1,260,175 + -0.3
1,260,263 + +0.5
1,260,263 + -0.1
1,260,458 + -0.3
1,260,459 - -0.9
1,260,461 - -1.3
1,260,846 + PS417_05600 0.18 -0.3
1,260,846 + PS417_05600 0.18 -0.3
1,260,847 - PS417_05600 0.18 -0.2
1,260,847 - PS417_05600 0.18 -0.6
1,260,925 - PS417_05600 0.21 -0.3
1,260,933 + PS417_05600 0.22 +0.8
1,261,028 + PS417_05600 0.26 -0.1
1,261,028 + PS417_05600 0.26 -0.1
1,261,028 + PS417_05600 0.26 -0.4
1,261,188 - PS417_05600 0.34 +0.1
1,261,368 + PS417_05600 0.42 +0.5
1,261,563 + PS417_05600 0.52 -0.8
1,261,576 + PS417_05600 0.52 -0.5
1,261,577 - PS417_05600 0.52 -0.0
1,261,577 - PS417_05600 0.52 -1.3
1,261,577 - PS417_05600 0.52 -0.1
1,261,734 + PS417_05600 0.60 -0.5
1,261,734 + PS417_05600 0.60 -1.3
1,261,734 + PS417_05600 0.60 -0.1
1,261,734 + PS417_05600 0.60 +0.1
1,261,734 + PS417_05600 0.60 -0.0
1,261,735 - PS417_05600 0.60 -0.7
1,261,735 - PS417_05600 0.60 -0.1
1,261,735 - PS417_05600 0.60 +0.0
1,261,820 + PS417_05600 0.64 +0.1
1,261,821 - PS417_05600 0.64 -0.3
1,261,821 - PS417_05600 0.64 -0.2
1,261,821 - PS417_05600 0.64 -0.2
1,261,835 + PS417_05600 0.65 -0.4
1,262,004 + PS417_05600 0.73 -0.5
1,262,004 + PS417_05600 0.73 -0.3
1,262,005 - PS417_05600 0.73 -0.2
1,262,249 + PS417_05600 0.84 -0.3
1,262,249 + PS417_05600 0.84 +1.7
1,262,249 + PS417_05600 0.84 -0.8
1,262,249 + PS417_05600 0.84 -0.1
1,262,249 + PS417_05600 0.84 +0.3
1,262,249 + PS417_05600 0.84 -0.2
1,262,249 + PS417_05600 0.84 +0.4
1,262,250 - PS417_05600 0.84 -0.5
1,262,250 - PS417_05600 0.84 -0.4
1,262,253 + PS417_05600 0.84 -0.6
1,262,253 + PS417_05600 0.84 -1.4
1,262,254 - PS417_05600 0.84 -0.3
1,262,570 - +1.3
1,262,606 - -0.0
1,263,010 + -0.0
1,263,070 - +0.0
1,263,089 + +1.0
1,263,089 + +0.7
1,263,089 + -0.5
1,263,089 + +1.1
1,263,089 + -0.0
1,263,089 + -0.3
1,263,093 + -0.2
1,263,405 + PS417_05610 0.72 +0.5
1,263,406 - PS417_05610 0.72 -0.7
1,263,444 + PS417_05610 0.80 -0.7
1,263,444 + PS417_05610 0.80 +0.9
1,263,445 - PS417_05610 0.80 -0.3
1,263,445 - PS417_05610 0.80 +1.4
1,263,445 - PS417_05610 0.80 +0.1
1,263,466 - PS417_05610 0.85 +0.1
1,263,557 + +0.5
1,263,560 + -0.0
1,263,560 + -0.3
1,263,560 + -0.1
1,263,560 + -1.2
1,263,569 - -0.0
1,263,570 + +0.1

Or see this region's nucleotide sequence