Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02840 and PS417_02845 are separated by 40 nucleotides PS417_02845 and PS417_02850 overlap by 4 nucleotides PS417_02850 and PS417_02855 overlap by 4 nucleotides
PS417_02840: PS417_02840 - hypothetical protein, at 643,648 to 649,542
_02840
PS417_02845: PS417_02845 - ABC transporter permease, at 649,583 to 650,593
_02845
PS417_02850: PS417_02850 - iron ABC transporter substrate-binding protein, at 650,590 to 651,537
_02850
PS417_02855: PS417_02855 - histidinol phosphatase, at 651,534 to 652,316
_02855
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1 at 648.640 kb on + strand, within PS417_02840 at 648.641 kb on - strand, within PS417_02840 at 648.645 kb on - strand, within PS417_02840 at 648.645 kb on - strand, within PS417_02840 at 648.740 kb on - strand, within PS417_02840 at 648.742 kb on + strand at 648.742 kb on + strand, within PS417_02840 at 648.742 kb on + strand, within PS417_02840 at 648.743 kb on - strand, within PS417_02840 at 648.775 kb on + strand, within PS417_02840 at 648.776 kb on - strand at 648.776 kb on - strand, within PS417_02840 at 648.798 kb on - strand, within PS417_02840 at 648.964 kb on + strand at 648.964 kb on + strand at 648.964 kb on + strand at 648.964 kb on + strand at 648.991 kb on - strand at 648.993 kb on + strand at 648.994 kb on - strand at 648.994 kb on - strand at 649.050 kb on + strand at 649.103 kb on + strand at 649.104 kb on - strand at 649.234 kb on + strand at 649.234 kb on + strand at 649.235 kb on - strand at 649.235 kb on - strand at 649.239 kb on - strand at 649.312 kb on + strand at 649.607 kb on - strand at 650.182 kb on + strand at 650.417 kb on - strand, within PS417_02845 at 650.466 kb on + strand, within PS417_02845 at 650.466 kb on + strand, within PS417_02845 at 650.467 kb on - strand, within PS417_02845 at 650.568 kb on - strand at 650.570 kb on + strand at 650.570 kb on + strand at 650.570 kb on + strand at 650.663 kb on + strand at 650.677 kb on - strand at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.853 kb on + strand, within PS417_02850 at 650.936 kb on + strand, within PS417_02850 at 651.015 kb on + strand, within PS417_02850 at 651.066 kb on + strand, within PS417_02850 at 651.067 kb on - strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.069 kb on - strand, within PS417_02850 at 651.069 kb on - strand, within PS417_02850 at 651.131 kb on + strand, within PS417_02850 at 651.254 kb on + strand, within PS417_02850 at 651.254 kb on + strand, within PS417_02850 at 651.464 kb on + strand at 651.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 648,640 + PS417_02840 0.85 -1.5 648,641 - PS417_02840 0.85 -0.4 648,645 - PS417_02840 0.85 +0.3 648,645 - PS417_02840 0.85 -0.9 648,740 - PS417_02840 0.86 +0.4 648,742 + +1.2 648,742 + PS417_02840 0.86 +0.3 648,742 + PS417_02840 0.86 -0.5 648,743 - PS417_02840 0.86 +0.4 648,775 + PS417_02840 0.87 +0.1 648,776 - +0.4 648,776 - PS417_02840 0.87 +0.4 648,798 - PS417_02840 0.87 +0.2 648,964 + -0.4 648,964 + -0.5 648,964 + +1.0 648,964 + +0.2 648,991 - -0.1 648,993 + -0.2 648,994 - +0.3 648,994 - -0.8 649,050 + -1.2 649,103 + -0.1 649,104 - -0.3 649,234 + -0.8 649,234 + +0.5 649,235 - +0.9 649,235 - -0.3 649,239 - -0.1 649,312 + +0.1 649,607 - +0.3 650,182 + +1.6 650,417 - PS417_02845 0.82 +0.0 650,466 + PS417_02845 0.87 +0.3 650,466 + PS417_02845 0.87 -0.9 650,467 - PS417_02845 0.87 -0.9 650,568 - -0.1 650,570 + -0.2 650,570 + -1.7 650,570 + -0.4 650,663 + -0.3 650,677 - -0.3 650,839 + PS417_02850 0.26 -2.2 650,839 + PS417_02850 0.26 -0.9 650,839 + PS417_02850 0.26 -0.1 650,839 + PS417_02850 0.26 +0.1 650,839 + PS417_02850 0.26 -0.2 650,840 - PS417_02850 0.26 +1.7 650,840 - PS417_02850 0.26 +0.7 650,840 - PS417_02850 0.26 -0.3 650,840 - PS417_02850 0.26 -0.7 650,853 + PS417_02850 0.28 -0.3 650,936 + PS417_02850 0.36 -1.1 651,015 + PS417_02850 0.45 +0.0 651,066 + PS417_02850 0.50 -0.4 651,067 - PS417_02850 0.50 +0.0 651,068 + PS417_02850 0.50 -0.2 651,068 + PS417_02850 0.50 -0.0 651,068 + PS417_02850 0.50 +0.4 651,068 + PS417_02850 0.50 -0.1 651,068 + PS417_02850 0.50 -0.7 651,069 - PS417_02850 0.51 -0.2 651,069 - PS417_02850 0.51 +0.1 651,131 + PS417_02850 0.57 +0.3 651,254 + PS417_02850 0.70 -0.2 651,254 + PS417_02850 0.70 +0.0 651,464 + +0.1 651,554 + -0.2
Or see this region's nucleotide sequence