Strain Fitness in Pseudomonas simiae WCS417 around PS417_18990

Experiment: R2A with Vogels_fungal_media 0.8X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_18980 and PS417_18990 are separated by 301 nucleotidesPS417_18990 and PS417_18995 are separated by 57 nucleotidesPS417_18995 and PS417_19000 are separated by 94 nucleotides PS417_18980: PS417_18980 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 4,109,010 to 4,109,825 _18980 PS417_18990: PS417_18990 - membrane protein, at 4,110,127 to 4,111,338 _18990 PS417_18995: PS417_18995 - endonuclease, at 4,111,396 to 4,112,190 _18995 PS417_19000: PS417_19000 - MFS transporter, at 4,112,285 to 4,113,502 _19000 Position (kb) 4110 4111 4112Strain fitness (log2 ratio) -2 -1 0 1at 4109.546 kb on - strand, within PS417_18980at 4109.546 kb on - strand, within PS417_18980at 4109.738 kb on - strand, within PS417_18980at 4109.945 kb on - strandat 4110.051 kb on + strandat 4110.052 kb on - strandat 4110.052 kb on - strandat 4110.052 kb on - strandat 4110.441 kb on + strand, within PS417_18990at 4110.441 kb on + strand, within PS417_18990at 4110.441 kb on + strand, within PS417_18990at 4110.442 kb on - strand, within PS417_18990at 4110.564 kb on + strand, within PS417_18990at 4110.602 kb on + strand, within PS417_18990at 4111.385 kb on - strandat 4111.386 kb on + strandat 4111.386 kb on + strandat 4111.387 kb on - strandat 4111.473 kb on - strandat 4111.517 kb on + strand, within PS417_18995at 4111.517 kb on + strand, within PS417_18995at 4111.517 kb on + strand, within PS417_18995at 4111.517 kb on + strand, within PS417_18995at 4111.518 kb on - strand, within PS417_18995at 4111.547 kb on + strand, within PS417_18995at 4111.637 kb on + strand, within PS417_18995at 4111.638 kb on - strand, within PS417_18995at 4111.974 kb on - strand, within PS417_18995at 4111.974 kb on - strand, within PS417_18995at 4112.186 kb on + strandat 4112.186 kb on + strandat 4112.186 kb on + strandat 4112.186 kb on + strandat 4112.186 kb on + strandat 4112.187 kb on - strandat 4112.187 kb on - strandat 4112.187 kb on - strandat 4112.195 kb on + strandat 4112.195 kb on + strandat 4112.195 kb on + strandat 4112.196 kb on - strandat 4112.265 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
remove
4,109,546 - PS417_18980 0.66 +1.0
4,109,546 - PS417_18980 0.66 -0.4
4,109,738 - PS417_18980 0.89 -0.2
4,109,945 - -0.2
4,110,051 + -1.3
4,110,052 - -0.3
4,110,052 - -0.2
4,110,052 - -0.7
4,110,441 + PS417_18990 0.26 -0.7
4,110,441 + PS417_18990 0.26 -1.2
4,110,441 + PS417_18990 0.26 -1.1
4,110,442 - PS417_18990 0.26 -0.4
4,110,564 + PS417_18990 0.36 -0.3
4,110,602 + PS417_18990 0.39 -1.1
4,111,385 - -0.7
4,111,386 + -0.5
4,111,386 + -0.7
4,111,387 - -0.3
4,111,473 - -0.2
4,111,517 + PS417_18995 0.15 +0.3
4,111,517 + PS417_18995 0.15 -0.3
4,111,517 + PS417_18995 0.15 -2.0
4,111,517 + PS417_18995 0.15 -0.8
4,111,518 - PS417_18995 0.15 -0.4
4,111,547 + PS417_18995 0.19 -1.1
4,111,637 + PS417_18995 0.30 -0.3
4,111,638 - PS417_18995 0.30 -0.5
4,111,974 - PS417_18995 0.73 -0.4
4,111,974 - PS417_18995 0.73 +0.9
4,112,186 + -0.1
4,112,186 + -0.3
4,112,186 + -0.6
4,112,186 + -0.1
4,112,186 + -0.0
4,112,187 - -0.5
4,112,187 - -0.3
4,112,187 - -0.7
4,112,195 + -1.2
4,112,195 + -0.5
4,112,195 + +0.1
4,112,196 - -0.6
4,112,265 - +0.1

Or see this region's nucleotide sequence