Strain Fitness in Pseudomonas simiae WCS417 around PS417_01815

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01810 and PS417_01815 overlap by 8 nucleotidesPS417_01815 and PS417_01820 are separated by 16 nucleotides PS417_01810: PS417_01810 - ABC transporter permease, at 404,012 to 404,971 _01810 PS417_01815: PS417_01815 - peptide ABC transporter ATP-binding protein, at 404,964 to 405,698 _01815 PS417_01820: PS417_01820 - chemotaxis protein, at 405,715 to 407,622 _01820 Position (kb) 404 405 406Strain fitness (log2 ratio) -1 0 1at 404.087 kb on + strandat 404.087 kb on + strandat 404.088 kb on - strandat 404.088 kb on - strandat 404.091 kb on - strandat 404.091 kb on - strandat 404.112 kb on - strand, within PS417_01810at 404.142 kb on - strand, within PS417_01810at 404.142 kb on - strand, within PS417_01810at 404.509 kb on + strand, within PS417_01810at 404.510 kb on - strand, within PS417_01810at 404.517 kb on + strand, within PS417_01810at 404.618 kb on + strand, within PS417_01810at 404.618 kb on + strand, within PS417_01810at 404.618 kb on + strand, within PS417_01810at 404.618 kb on + strand, within PS417_01810at 404.619 kb on - strand, within PS417_01810at 404.619 kb on - strand, within PS417_01810at 404.773 kb on + strand, within PS417_01810at 404.773 kb on + strand, within PS417_01810at 404.774 kb on - strand, within PS417_01810at 404.775 kb on + strand, within PS417_01810at 404.776 kb on - strand, within PS417_01810at 404.900 kb on + strandat 404.900 kb on + strandat 404.987 kb on - strandat 404.987 kb on - strandat 405.249 kb on - strand, within PS417_01815at 405.249 kb on - strand, within PS417_01815at 405.697 kb on - strandat 405.838 kb on + strandat 405.838 kb on + strandat 406.001 kb on + strand, within PS417_01820at 406.002 kb on - strand, within PS417_01820at 406.464 kb on + strand, within PS417_01820

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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404,087 + -0.6
404,087 + +0.0
404,088 - -0.1
404,088 - +0.1
404,091 - +0.5
404,091 - -1.1
404,112 - PS417_01810 0.10 -0.3
404,142 - PS417_01810 0.14 -0.0
404,142 - PS417_01810 0.14 -0.4
404,509 + PS417_01810 0.52 -1.0
404,510 - PS417_01810 0.52 +0.7
404,517 + PS417_01810 0.53 +0.1
404,618 + PS417_01810 0.63 -0.3
404,618 + PS417_01810 0.63 -1.4
404,618 + PS417_01810 0.63 -0.1
404,618 + PS417_01810 0.63 +0.7
404,619 - PS417_01810 0.63 +0.3
404,619 - PS417_01810 0.63 -0.8
404,773 + PS417_01810 0.79 -0.4
404,773 + PS417_01810 0.79 -1.2
404,774 - PS417_01810 0.79 -0.3
404,775 + PS417_01810 0.79 -0.1
404,776 - PS417_01810 0.80 -0.0
404,900 + -0.1
404,900 + +0.4
404,987 - -0.3
404,987 - +0.2
405,249 - PS417_01815 0.39 -1.7
405,249 - PS417_01815 0.39 -0.3
405,697 - -0.3
405,838 + +0.1
405,838 + +0.2
406,001 + PS417_01820 0.15 +0.4
406,002 - PS417_01820 0.15 -0.1
406,464 + PS417_01820 0.39 -0.4

Or see this region's nucleotide sequence