Strain Fitness in Pseudomonas simiae WCS417 around PS417_17410

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17405 and PS417_17410 are separated by 184 nucleotidesPS417_17410 and PS417_17415 are separated by 79 nucleotides PS417_17405: PS417_17405 - AraC family transcriptional regulator, at 3,801,816 to 3,802,604 _17405 PS417_17410: PS417_17410 - membrane protein, at 3,802,789 to 3,804,267 _17410 PS417_17415: PS417_17415 - histidine kinase, at 3,804,347 to 3,805,717 _17415 Position (kb) 3802 3803 3804 3805Strain fitness (log2 ratio) -1 0 1at 3801.811 kb on + strandat 3801.811 kb on + strandat 3801.811 kb on + strandat 3801.816 kb on - strandat 3801.816 kb on - strandat 3801.835 kb on + strandat 3801.836 kb on - strandat 3801.873 kb on + strandat 3802.220 kb on + strand, within PS417_17405at 3802.272 kb on + strand, within PS417_17405at 3802.303 kb on + strand, within PS417_17405at 3802.605 kb on + strandat 3802.726 kb on + strandat 3802.948 kb on - strand, within PS417_17410at 3803.325 kb on - strand, within PS417_17410at 3803.440 kb on + strand, within PS417_17410at 3803.608 kb on - strand, within PS417_17410at 3804.087 kb on - strand, within PS417_17410at 3804.087 kb on - strand, within PS417_17410at 3804.087 kb on - strand, within PS417_17410at 3804.205 kb on + strandat 3804.549 kb on + strand, within PS417_17415at 3804.550 kb on - strand, within PS417_17415at 3804.732 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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3,801,811 + +0.9
3,801,811 + -0.2
3,801,811 + -0.4
3,801,816 - +0.3
3,801,816 - -0.6
3,801,835 + +0.0
3,801,836 - -0.2
3,801,873 + -0.5
3,802,220 + PS417_17405 0.51 -0.6
3,802,272 + PS417_17405 0.58 -0.3
3,802,303 + PS417_17405 0.62 +0.5
3,802,605 + +1.1
3,802,726 + -0.3
3,802,948 - PS417_17410 0.11 +0.2
3,803,325 - PS417_17410 0.36 -1.4
3,803,440 + PS417_17410 0.44 -0.2
3,803,608 - PS417_17410 0.55 +0.2
3,804,087 - PS417_17410 0.88 -1.0
3,804,087 - PS417_17410 0.88 -0.4
3,804,087 - PS417_17410 0.88 -0.4
3,804,205 + -1.6
3,804,549 + PS417_17415 0.15 +0.6
3,804,550 - PS417_17415 0.15 -0.2
3,804,732 - -1.1

Or see this region's nucleotide sequence