Strain Fitness in Pseudomonas simiae WCS417 around PS417_16265

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16260 and PS417_16265 are separated by 194 nucleotidesPS417_16265 and PS417_16270 are separated by 134 nucleotides PS417_16260: PS417_16260 - TonB-dependent receptor, at 3,563,099 to 3,565,216 _16260 PS417_16265: PS417_16265 - hypothetical protein, at 3,565,411 to 3,565,680 _16265 PS417_16270: PS417_16270 - hypothetical protein, at 3,565,815 to 3,566,564 _16270 Position (kb) 3565 3566Strain fitness (log2 ratio) -2 -1 0 1at 3564.507 kb on + strand, within PS417_16260at 3564.507 kb on + strand, within PS417_16260at 3564.624 kb on + strand, within PS417_16260at 3564.624 kb on + strand, within PS417_16260at 3564.624 kb on + strand, within PS417_16260at 3564.625 kb on - strand, within PS417_16260at 3564.625 kb on - strand, within PS417_16260at 3564.628 kb on - strand, within PS417_16260at 3564.628 kb on - strand, within PS417_16260at 3564.696 kb on + strand, within PS417_16260at 3564.723 kb on + strand, within PS417_16260at 3564.741 kb on + strand, within PS417_16260at 3564.741 kb on + strand, within PS417_16260at 3564.741 kb on + strand, within PS417_16260at 3564.742 kb on - strand, within PS417_16260at 3564.979 kb on - strand, within PS417_16260at 3565.001 kb on + strand, within PS417_16260at 3565.001 kb on + strand, within PS417_16260at 3565.053 kb on + strandat 3565.053 kb on + strandat 3565.054 kb on - strandat 3565.285 kb on + strandat 3565.286 kb on - strandat 3565.286 kb on - strandat 3565.286 kb on - strandat 3565.481 kb on + strand, within PS417_16265at 3565.597 kb on - strand, within PS417_16265at 3565.627 kb on - strand, within PS417_16265at 3565.640 kb on - strand, within PS417_16265at 3565.654 kb on - strandat 3565.684 kb on - strandat 3565.695 kb on - strandat 3565.695 kb on - strandat 3565.715 kb on + strandat 3565.715 kb on + strandat 3565.716 kb on - strandat 3565.757 kb on - strandat 3565.790 kb on + strandat 3565.791 kb on - strandat 3565.796 kb on + strandat 3565.797 kb on - strandat 3565.797 kb on - strandat 3565.816 kb on + strandat 3565.817 kb on - strandat 3565.858 kb on + strandat 3565.859 kb on - strandat 3565.859 kb on - strandat 3565.859 kb on - strandat 3565.859 kb on - strandat 3566.095 kb on + strand, within PS417_16270at 3566.096 kb on - strandat 3566.146 kb on + strand, within PS417_16270at 3566.147 kb on - strand, within PS417_16270at 3566.194 kb on + strand, within PS417_16270at 3566.195 kb on - strand, within PS417_16270at 3566.332 kb on + strand, within PS417_16270at 3566.350 kb on - strand, within PS417_16270at 3566.353 kb on + strand, within PS417_16270at 3566.497 kb on - strandat 3566.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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3,564,507 + PS417_16260 0.66 -0.2
3,564,507 + PS417_16260 0.66 +0.0
3,564,624 + PS417_16260 0.72 +0.4
3,564,624 + PS417_16260 0.72 +0.2
3,564,624 + PS417_16260 0.72 -0.2
3,564,625 - PS417_16260 0.72 +0.2
3,564,625 - PS417_16260 0.72 -0.2
3,564,628 - PS417_16260 0.72 -0.6
3,564,628 - PS417_16260 0.72 -0.8
3,564,696 + PS417_16260 0.75 +1.1
3,564,723 + PS417_16260 0.77 +0.7
3,564,741 + PS417_16260 0.78 +1.6
3,564,741 + PS417_16260 0.78 +0.2
3,564,741 + PS417_16260 0.78 +0.3
3,564,742 - PS417_16260 0.78 -0.0
3,564,979 - PS417_16260 0.89 -2.4
3,565,001 + PS417_16260 0.90 -0.1
3,565,001 + PS417_16260 0.90 -0.1
3,565,053 + -0.3
3,565,053 + -0.3
3,565,054 - -0.4
3,565,285 + +0.1
3,565,286 - +0.0
3,565,286 - +0.7
3,565,286 - +0.9
3,565,481 + PS417_16265 0.26 -0.3
3,565,597 - PS417_16265 0.69 -1.0
3,565,627 - PS417_16265 0.80 -0.1
3,565,640 - PS417_16265 0.85 -0.5
3,565,654 - -0.4
3,565,684 - +0.8
3,565,695 - -0.6
3,565,695 - -1.5
3,565,715 + -0.0
3,565,715 + +0.0
3,565,716 - -0.2
3,565,757 - +1.6
3,565,790 + +0.3
3,565,791 - +0.2
3,565,796 + +0.0
3,565,797 - +0.1
3,565,797 - -0.3
3,565,816 + +1.3
3,565,817 - +0.0
3,565,858 + -0.0
3,565,859 - +0.1
3,565,859 - +0.1
3,565,859 - +0.0
3,565,859 - +0.9
3,566,095 + PS417_16270 0.37 -0.4
3,566,096 - -0.0
3,566,146 + PS417_16270 0.44 -0.6
3,566,147 - PS417_16270 0.44 -0.6
3,566,194 + PS417_16270 0.51 +0.5
3,566,195 - PS417_16270 0.51 -0.1
3,566,332 + PS417_16270 0.69 +0.1
3,566,350 - PS417_16270 0.71 -0.2
3,566,353 + PS417_16270 0.72 +0.4
3,566,497 - -0.1
3,566,622 - -0.0

Or see this region's nucleotide sequence