Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16260 and PS417_16265 are separated by 194 nucleotides PS417_16265 and PS417_16270 are separated by 134 nucleotides
PS417_16260: PS417_16260 - TonB-dependent receptor, at 3,563,099 to 3,565,216
_16260
PS417_16265: PS417_16265 - hypothetical protein, at 3,565,411 to 3,565,680
_16265
PS417_16270: PS417_16270 - hypothetical protein, at 3,565,815 to 3,566,564
_16270
Position (kb)
3565
3566 Strain fitness (log2 ratio)
-2
-1
0
1 at 3564.507 kb on + strand, within PS417_16260 at 3564.507 kb on + strand, within PS417_16260 at 3564.624 kb on + strand, within PS417_16260 at 3564.624 kb on + strand, within PS417_16260 at 3564.624 kb on + strand, within PS417_16260 at 3564.625 kb on - strand, within PS417_16260 at 3564.625 kb on - strand, within PS417_16260 at 3564.628 kb on - strand, within PS417_16260 at 3564.628 kb on - strand, within PS417_16260 at 3564.696 kb on + strand, within PS417_16260 at 3564.723 kb on + strand, within PS417_16260 at 3564.741 kb on + strand, within PS417_16260 at 3564.741 kb on + strand, within PS417_16260 at 3564.741 kb on + strand, within PS417_16260 at 3564.742 kb on - strand, within PS417_16260 at 3564.979 kb on - strand, within PS417_16260 at 3565.001 kb on + strand, within PS417_16260 at 3565.001 kb on + strand, within PS417_16260 at 3565.053 kb on + strand at 3565.053 kb on + strand at 3565.054 kb on - strand at 3565.285 kb on + strand at 3565.286 kb on - strand at 3565.286 kb on - strand at 3565.286 kb on - strand at 3565.481 kb on + strand, within PS417_16265 at 3565.597 kb on - strand, within PS417_16265 at 3565.627 kb on - strand, within PS417_16265 at 3565.640 kb on - strand, within PS417_16265 at 3565.654 kb on - strand at 3565.684 kb on - strand at 3565.695 kb on - strand at 3565.695 kb on - strand at 3565.715 kb on + strand at 3565.715 kb on + strand at 3565.716 kb on - strand at 3565.757 kb on - strand at 3565.790 kb on + strand at 3565.791 kb on - strand at 3565.796 kb on + strand at 3565.797 kb on - strand at 3565.797 kb on - strand at 3565.816 kb on + strand at 3565.817 kb on - strand at 3565.858 kb on + strand at 3565.859 kb on - strand at 3565.859 kb on - strand at 3565.859 kb on - strand at 3565.859 kb on - strand at 3566.095 kb on + strand, within PS417_16270 at 3566.096 kb on - strand at 3566.146 kb on + strand, within PS417_16270 at 3566.147 kb on - strand, within PS417_16270 at 3566.194 kb on + strand, within PS417_16270 at 3566.195 kb on - strand, within PS417_16270 at 3566.332 kb on + strand, within PS417_16270 at 3566.350 kb on - strand, within PS417_16270 at 3566.353 kb on + strand, within PS417_16270 at 3566.497 kb on - strand at 3566.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 3,564,507 + PS417_16260 0.66 -0.2 3,564,507 + PS417_16260 0.66 +0.0 3,564,624 + PS417_16260 0.72 +0.4 3,564,624 + PS417_16260 0.72 +0.2 3,564,624 + PS417_16260 0.72 -0.2 3,564,625 - PS417_16260 0.72 +0.2 3,564,625 - PS417_16260 0.72 -0.2 3,564,628 - PS417_16260 0.72 -0.6 3,564,628 - PS417_16260 0.72 -0.8 3,564,696 + PS417_16260 0.75 +1.1 3,564,723 + PS417_16260 0.77 +0.7 3,564,741 + PS417_16260 0.78 +1.6 3,564,741 + PS417_16260 0.78 +0.2 3,564,741 + PS417_16260 0.78 +0.3 3,564,742 - PS417_16260 0.78 -0.0 3,564,979 - PS417_16260 0.89 -2.4 3,565,001 + PS417_16260 0.90 -0.1 3,565,001 + PS417_16260 0.90 -0.1 3,565,053 + -0.3 3,565,053 + -0.3 3,565,054 - -0.4 3,565,285 + +0.1 3,565,286 - +0.0 3,565,286 - +0.7 3,565,286 - +0.9 3,565,481 + PS417_16265 0.26 -0.3 3,565,597 - PS417_16265 0.69 -1.0 3,565,627 - PS417_16265 0.80 -0.1 3,565,640 - PS417_16265 0.85 -0.5 3,565,654 - -0.4 3,565,684 - +0.8 3,565,695 - -0.6 3,565,695 - -1.5 3,565,715 + -0.0 3,565,715 + +0.0 3,565,716 - -0.2 3,565,757 - +1.6 3,565,790 + +0.3 3,565,791 - +0.2 3,565,796 + +0.0 3,565,797 - +0.1 3,565,797 - -0.3 3,565,816 + +1.3 3,565,817 - +0.0 3,565,858 + -0.0 3,565,859 - +0.1 3,565,859 - +0.1 3,565,859 - +0.0 3,565,859 - +0.9 3,566,095 + PS417_16270 0.37 -0.4 3,566,096 - -0.0 3,566,146 + PS417_16270 0.44 -0.6 3,566,147 - PS417_16270 0.44 -0.6 3,566,194 + PS417_16270 0.51 +0.5 3,566,195 - PS417_16270 0.51 -0.1 3,566,332 + PS417_16270 0.69 +0.1 3,566,350 - PS417_16270 0.71 -0.2 3,566,353 + PS417_16270 0.72 +0.4 3,566,497 - -0.1 3,566,622 - -0.0
Or see this region's nucleotide sequence