Strain Fitness in Pseudomonas simiae WCS417 around PS417_14255

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14245 and PS417_14250 overlap by 1 nucleotidesPS417_14250 and PS417_14255 are separated by 27 nucleotidesPS417_14255 and PS417_14260 are separated by 76 nucleotidesPS417_14260 and PS417_14265 overlap by 1 nucleotides PS417_14245: PS417_14245 - hypothetical protein, at 3,118,090 to 3,118,680 _14245 PS417_14250: PS417_14250 - hypothetical protein, at 3,118,680 to 3,119,378 _14250 PS417_14255: PS417_14255 - phosphate import ATP-binding protein PstB, at 3,119,406 to 3,120,167 _14255 PS417_14260: PS417_14260 - phosphate ABC transporter permease, at 3,120,244 to 3,121,137 _14260 PS417_14265: PS417_14265 - phosphate ABC transporter permease, at 3,121,137 to 3,122,102 _14265 Position (kb) 3119 3120 3121Strain fitness (log2 ratio) -2 -1 0 1 2at 3118.427 kb on + strand, within PS417_14245at 3118.427 kb on + strand, within PS417_14245at 3118.427 kb on + strand, within PS417_14245at 3118.428 kb on - strand, within PS417_14245at 3118.748 kb on + strandat 3118.748 kb on + strandat 3118.749 kb on - strandat 3118.795 kb on + strand, within PS417_14250at 3118.912 kb on + strand, within PS417_14250at 3118.980 kb on + strand, within PS417_14250at 3118.981 kb on - strand, within PS417_14250at 3118.981 kb on - strand, within PS417_14250at 3118.985 kb on - strand, within PS417_14250at 3118.985 kb on - strand, within PS417_14250at 3118.985 kb on - strand, within PS417_14250at 3119.032 kb on + strand, within PS417_14250at 3119.041 kb on + strand, within PS417_14250at 3119.042 kb on - strand, within PS417_14250at 3119.110 kb on + strand, within PS417_14250at 3119.146 kb on - strand, within PS417_14250at 3119.215 kb on + strand, within PS417_14250at 3119.215 kb on + strand, within PS417_14250at 3119.216 kb on - strand, within PS417_14250at 3119.216 kb on - strand, within PS417_14250at 3119.216 kb on - strand, within PS417_14250at 3119.429 kb on - strandat 3119.596 kb on + strand, within PS417_14255at 3119.597 kb on - strand, within PS417_14255at 3119.923 kb on + strand, within PS417_14255at 3120.113 kb on + strandat 3120.114 kb on - strandat 3120.216 kb on + strandat 3120.216 kb on + strandat 3120.216 kb on + strandat 3120.217 kb on - strandat 3120.245 kb on + strandat 3120.245 kb on + strandat 3120.245 kb on + strandat 3120.246 kb on - strandat 3120.246 kb on - strandat 3120.248 kb on + strandat 3120.267 kb on + strandat 3120.369 kb on - strand, within PS417_14260at 3120.426 kb on - strand, within PS417_14260at 3120.581 kb on + strand, within PS417_14260at 3120.645 kb on + strand, within PS417_14260at 3120.995 kb on + strand, within PS417_14260at 3120.996 kb on - strandat 3121.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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3,118,427 + PS417_14245 0.57 -0.1
3,118,427 + PS417_14245 0.57 +0.7
3,118,427 + PS417_14245 0.57 -0.1
3,118,428 - PS417_14245 0.57 +0.3
3,118,748 + -0.2
3,118,748 + -0.5
3,118,749 - -0.1
3,118,795 + PS417_14250 0.16 -0.5
3,118,912 + PS417_14250 0.33 +0.6
3,118,980 + PS417_14250 0.43 -0.1
3,118,981 - PS417_14250 0.43 -0.1
3,118,981 - PS417_14250 0.43 +0.3
3,118,985 - PS417_14250 0.44 +0.0
3,118,985 - PS417_14250 0.44 +0.1
3,118,985 - PS417_14250 0.44 -0.1
3,119,032 + PS417_14250 0.50 +2.0
3,119,041 + PS417_14250 0.52 +1.2
3,119,042 - PS417_14250 0.52 -0.6
3,119,110 + PS417_14250 0.62 -0.1
3,119,146 - PS417_14250 0.67 +0.6
3,119,215 + PS417_14250 0.77 -0.4
3,119,215 + PS417_14250 0.77 -0.0
3,119,216 - PS417_14250 0.77 +0.1
3,119,216 - PS417_14250 0.77 +0.2
3,119,216 - PS417_14250 0.77 -0.2
3,119,429 - -0.3
3,119,596 + PS417_14255 0.25 -0.8
3,119,597 - PS417_14255 0.25 -0.3
3,119,923 + PS417_14255 0.68 -0.2
3,120,113 + +0.2
3,120,114 - -0.7
3,120,216 + -0.2
3,120,216 + +0.1
3,120,216 + -1.0
3,120,217 - -0.6
3,120,245 + -0.7
3,120,245 + +0.0
3,120,245 + -1.0
3,120,246 - -0.2
3,120,246 - +0.0
3,120,248 + +0.5
3,120,267 + -2.5
3,120,369 - PS417_14260 0.14 +0.1
3,120,426 - PS417_14260 0.20 -0.7
3,120,581 + PS417_14260 0.38 +0.1
3,120,645 + PS417_14260 0.45 -0.4
3,120,995 + PS417_14260 0.84 -0.1
3,120,996 - -0.5
3,121,122 + -0.8

Or see this region's nucleotide sequence