Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14245 and PS417_14250 overlap by 1 nucleotides PS417_14250 and PS417_14255 are separated by 27 nucleotides PS417_14255 and PS417_14260 are separated by 76 nucleotides PS417_14260 and PS417_14265 overlap by 1 nucleotides
PS417_14245: PS417_14245 - hypothetical protein, at 3,118,090 to 3,118,680
_14245
PS417_14250: PS417_14250 - hypothetical protein, at 3,118,680 to 3,119,378
_14250
PS417_14255: PS417_14255 - phosphate import ATP-binding protein PstB, at 3,119,406 to 3,120,167
_14255
PS417_14260: PS417_14260 - phosphate ABC transporter permease, at 3,120,244 to 3,121,137
_14260
PS417_14265: PS417_14265 - phosphate ABC transporter permease, at 3,121,137 to 3,122,102
_14265
Position (kb)
3119
3120
3121 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3118.427 kb on + strand, within PS417_14245 at 3118.427 kb on + strand, within PS417_14245 at 3118.427 kb on + strand, within PS417_14245 at 3118.428 kb on - strand, within PS417_14245 at 3118.748 kb on + strand at 3118.748 kb on + strand at 3118.749 kb on - strand at 3118.795 kb on + strand, within PS417_14250 at 3118.912 kb on + strand, within PS417_14250 at 3118.980 kb on + strand, within PS417_14250 at 3118.981 kb on - strand, within PS417_14250 at 3118.981 kb on - strand, within PS417_14250 at 3118.985 kb on - strand, within PS417_14250 at 3118.985 kb on - strand, within PS417_14250 at 3118.985 kb on - strand, within PS417_14250 at 3119.032 kb on + strand, within PS417_14250 at 3119.041 kb on + strand, within PS417_14250 at 3119.042 kb on - strand, within PS417_14250 at 3119.110 kb on + strand, within PS417_14250 at 3119.146 kb on - strand, within PS417_14250 at 3119.215 kb on + strand, within PS417_14250 at 3119.215 kb on + strand, within PS417_14250 at 3119.216 kb on - strand, within PS417_14250 at 3119.216 kb on - strand, within PS417_14250 at 3119.216 kb on - strand, within PS417_14250 at 3119.429 kb on - strand at 3119.596 kb on + strand, within PS417_14255 at 3119.597 kb on - strand, within PS417_14255 at 3119.923 kb on + strand, within PS417_14255 at 3120.113 kb on + strand at 3120.114 kb on - strand at 3120.216 kb on + strand at 3120.216 kb on + strand at 3120.216 kb on + strand at 3120.217 kb on - strand at 3120.245 kb on + strand at 3120.245 kb on + strand at 3120.245 kb on + strand at 3120.246 kb on - strand at 3120.246 kb on - strand at 3120.248 kb on + strand at 3120.267 kb on + strand at 3120.369 kb on - strand, within PS417_14260 at 3120.426 kb on - strand, within PS417_14260 at 3120.581 kb on + strand, within PS417_14260 at 3120.645 kb on + strand, within PS417_14260 at 3120.995 kb on + strand, within PS417_14260 at 3120.996 kb on - strand at 3121.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 3,118,427 + PS417_14245 0.57 -0.1 3,118,427 + PS417_14245 0.57 +0.7 3,118,427 + PS417_14245 0.57 -0.1 3,118,428 - PS417_14245 0.57 +0.3 3,118,748 + -0.2 3,118,748 + -0.5 3,118,749 - -0.1 3,118,795 + PS417_14250 0.16 -0.5 3,118,912 + PS417_14250 0.33 +0.6 3,118,980 + PS417_14250 0.43 -0.1 3,118,981 - PS417_14250 0.43 -0.1 3,118,981 - PS417_14250 0.43 +0.3 3,118,985 - PS417_14250 0.44 +0.0 3,118,985 - PS417_14250 0.44 +0.1 3,118,985 - PS417_14250 0.44 -0.1 3,119,032 + PS417_14250 0.50 +2.0 3,119,041 + PS417_14250 0.52 +1.2 3,119,042 - PS417_14250 0.52 -0.6 3,119,110 + PS417_14250 0.62 -0.1 3,119,146 - PS417_14250 0.67 +0.6 3,119,215 + PS417_14250 0.77 -0.4 3,119,215 + PS417_14250 0.77 -0.0 3,119,216 - PS417_14250 0.77 +0.1 3,119,216 - PS417_14250 0.77 +0.2 3,119,216 - PS417_14250 0.77 -0.2 3,119,429 - -0.3 3,119,596 + PS417_14255 0.25 -0.8 3,119,597 - PS417_14255 0.25 -0.3 3,119,923 + PS417_14255 0.68 -0.2 3,120,113 + +0.2 3,120,114 - -0.7 3,120,216 + -0.2 3,120,216 + +0.1 3,120,216 + -1.0 3,120,217 - -0.6 3,120,245 + -0.7 3,120,245 + +0.0 3,120,245 + -1.0 3,120,246 - -0.2 3,120,246 - +0.0 3,120,248 + +0.5 3,120,267 + -2.5 3,120,369 - PS417_14260 0.14 +0.1 3,120,426 - PS417_14260 0.20 -0.7 3,120,581 + PS417_14260 0.38 +0.1 3,120,645 + PS417_14260 0.45 -0.4 3,120,995 + PS417_14260 0.84 -0.1 3,120,996 - -0.5 3,121,122 + -0.8
Or see this region's nucleotide sequence