Strain Fitness in Escherichia coli BW25113 around b2847

Experiment: M9 Glucose 2%, 20 mM NO3- anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyqeH and yqeI are separated by 333 nucleotidesyqeI and yqeJ overlap by 8 nucleotidesyqeJ and yqeL are separated by 32 nucleotidesyqeL and yqeK are separated by 35 nucleotides b2846: yqeH - orf, hypothetical protein (VIMSS), at 2,985,558 to 2,986,190 yqeH b2847: yqeI - predicted transcriptional regulator (NCBI), at 2,986,524 to 2,987,333 yqeI b2848: yqeJ - orf, hypothetical protein (VIMSS), at 2,987,326 to 2,987,808 yqeJ b4683: yqeL - expressed protein (RefSeq), at 2,987,841 to 2,987,921 yqeL b2849: yqeK - orf, hypothetical protein (VIMSS), at 2,987,957 to 2,988,382 yqeK Position (kb) 2986 2987 2988Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2985.575 kb on + strandat 2985.829 kb on + strand, within yqeHat 2985.916 kb on + strand, within yqeHat 2986.179 kb on + strandat 2986.179 kb on + strandat 2986.213 kb on + strandat 2986.481 kb on - strandat 2986.590 kb on - strandat 2986.625 kb on - strand, within yqeIat 2986.657 kb on + strand, within yqeIat 2986.674 kb on - strand, within yqeIat 2986.710 kb on + strand, within yqeIat 2986.711 kb on + strand, within yqeIat 2986.715 kb on + strand, within yqeIat 2986.715 kb on + strand, within yqeIat 2986.715 kb on + strand, within yqeIat 2986.737 kb on + strand, within yqeIat 2986.745 kb on - strand, within yqeIat 2986.752 kb on + strand, within yqeIat 2986.776 kb on + strand, within yqeIat 2986.776 kb on + strand, within yqeIat 2986.783 kb on + strand, within yqeIat 2986.860 kb on + strand, within yqeIat 2986.875 kb on + strand, within yqeIat 2986.882 kb on + strand, within yqeIat 2986.884 kb on + strand, within yqeIat 2986.884 kb on + strand, within yqeIat 2986.886 kb on + strand, within yqeIat 2986.886 kb on + strand, within yqeIat 2986.890 kb on + strand, within yqeIat 2986.892 kb on + strand, within yqeIat 2986.924 kb on + strand, within yqeIat 2987.296 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 Glucose 2%, 20 mM NO3- anaerobic
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2,985,575 + -2.0
2,985,829 + yqeH b2846 0.43 -0.8
2,985,916 + yqeH b2846 0.57 -0.7
2,986,179 + -3.8
2,986,179 + -1.1
2,986,213 + -0.5
2,986,481 - -1.7
2,986,590 - -2.5
2,986,625 - yqeI b2847 0.12 -2.5
2,986,657 + yqeI b2847 0.16 -1.7
2,986,674 - yqeI b2847 0.19 -1.0
2,986,710 + yqeI b2847 0.23 -2.9
2,986,711 + yqeI b2847 0.23 -2.5
2,986,715 + yqeI b2847 0.24 -2.7
2,986,715 + yqeI b2847 0.24 -2.6
2,986,715 + yqeI b2847 0.24 -1.8
2,986,737 + yqeI b2847 0.26 -2.6
2,986,745 - yqeI b2847 0.27 -0.7
2,986,752 + yqeI b2847 0.28 -0.7
2,986,776 + yqeI b2847 0.31 -4.2
2,986,776 + yqeI b2847 0.31 -3.5
2,986,783 + yqeI b2847 0.32 -2.9
2,986,860 + yqeI b2847 0.41 +1.6
2,986,875 + yqeI b2847 0.43 -2.7
2,986,882 + yqeI b2847 0.44 -0.7
2,986,884 + yqeI b2847 0.44 -1.9
2,986,884 + yqeI b2847 0.44 -1.9
2,986,886 + yqeI b2847 0.45 -1.6
2,986,886 + yqeI b2847 0.45 -3.1
2,986,890 + yqeI b2847 0.45 -2.3
2,986,892 + yqeI b2847 0.45 -1.6
2,986,924 + yqeI b2847 0.49 -1.7
2,987,296 + -1.7

Or see this region's nucleotide sequence