Strain Fitness in Escherichia coli BW25113 around b2360

Experiment: M9 Glucose 2% anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntoweS and yfdP are separated by 18 nucleotidesyfdP and yfdQ are separated by 65 nucleotidesyfdQ and b2361 are separated by 127 nucleotidesb2361 and yfdS overlap by 10 nucleotides b2358: oweS - CPS-53 (KpLE1) prophage; predicted defective phage replication protein O (RefSeq), at 2,470,900 to 2,471,607 oweS b2359: yfdP - CPS-53 (KpLE1) prophage; predicted protein (RefSeq), at 2,471,626 to 2,471,988 yfdP b2360: yfdQ - CPS-53 (KpLE1) prophage; predicted protein (NCBI), at 2,472,054 to 2,472,878 yfdQ b2361: b2361 - orf, hypothetical protein (VIMSS), at 2,473,006 to 2,473,542 b2361 b2362: yfdS - CPS-53 (KpLE1) prophage; predicted protein (NCBI), at 2,473,533 to 2,473,895 yfdS Position (kb) 2472 2473Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2471.090 kb on + strand, within oweSat 2471.133 kb on + strand, within oweSat 2471.133 kb on + strand, within oweSat 2471.201 kb on + strand, within oweSat 2471.201 kb on + strand, within oweSat 2471.263 kb on + strand, within oweSat 2471.277 kb on - strand, within oweSat 2471.277 kb on - strand, within oweSat 2471.372 kb on + strand, within oweSat 2471.372 kb on + strand, within oweSat 2471.526 kb on + strand, within oweSat 2471.539 kb on - strandat 2471.605 kb on + strandat 2471.605 kb on + strandat 2471.765 kb on - strand, within yfdPat 2471.783 kb on + strand, within yfdPat 2471.835 kb on + strand, within yfdPat 2471.841 kb on - strand, within yfdPat 2471.906 kb on + strand, within yfdPat 2471.906 kb on + strand, within yfdPat 2471.909 kb on + strand, within yfdPat 2471.909 kb on + strand, within yfdPat 2471.913 kb on + strand, within yfdPat 2471.936 kb on + strand, within yfdPat 2471.936 kb on + strand, within yfdPat 2471.945 kb on + strand, within yfdPat 2471.945 kb on + strand, within yfdPat 2471.970 kb on + strandat 2471.970 kb on + strandat 2472.031 kb on + strandat 2472.074 kb on + strandat 2472.223 kb on - strand, within yfdQat 2472.227 kb on + strand, within yfdQat 2472.228 kb on - strand, within yfdQat 2472.235 kb on + strand, within yfdQat 2472.235 kb on - strand, within yfdQat 2472.235 kb on - strand, within yfdQat 2472.258 kb on - strand, within yfdQat 2472.272 kb on - strand, within yfdQat 2472.287 kb on - strand, within yfdQat 2472.287 kb on - strand, within yfdQat 2472.297 kb on - strand, within yfdQat 2472.303 kb on - strand, within yfdQat 2472.309 kb on + strand, within yfdQat 2472.309 kb on + strand, within yfdQat 2472.317 kb on - strand, within yfdQat 2472.317 kb on - strand, within yfdQat 2472.336 kb on + strand, within yfdQat 2472.337 kb on + strand, within yfdQat 2472.337 kb on + strand, within yfdQat 2472.339 kb on - strand, within yfdQat 2472.340 kb on - strand, within yfdQat 2472.343 kb on + strand, within yfdQat 2472.343 kb on - strand, within yfdQat 2472.346 kb on + strand, within yfdQat 2472.346 kb on - strand, within yfdQat 2472.353 kb on - strand, within yfdQat 2472.362 kb on - strand, within yfdQat 2472.363 kb on - strand, within yfdQat 2472.367 kb on - strand, within yfdQat 2472.367 kb on - strand, within yfdQat 2472.404 kb on + strand, within yfdQat 2472.410 kb on - strand, within yfdQat 2472.410 kb on - strand, within yfdQat 2472.417 kb on - strand, within yfdQat 2472.417 kb on - strand, within yfdQat 2472.451 kb on - strand, within yfdQat 2472.490 kb on - strand, within yfdQat 2472.492 kb on - strand, within yfdQat 2472.511 kb on - strand, within yfdQat 2472.577 kb on - strand, within yfdQat 2472.577 kb on - strand, within yfdQat 2472.578 kb on - strand, within yfdQat 2472.591 kb on - strand, within yfdQat 2472.618 kb on + strand, within yfdQat 2472.618 kb on + strand, within yfdQat 2472.626 kb on - strand, within yfdQat 2472.626 kb on - strand, within yfdQat 2472.630 kb on + strand, within yfdQat 2472.679 kb on - strand, within yfdQat 2472.684 kb on + strand, within yfdQat 2472.684 kb on + strand, within yfdQat 2472.686 kb on + strand, within yfdQat 2472.686 kb on + strand, within yfdQat 2472.704 kb on - strand, within yfdQat 2472.731 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.746 kb on + strand, within yfdQat 2472.750 kb on + strand, within yfdQat 2472.759 kb on - strand, within yfdQat 2472.763 kb on + strand, within yfdQat 2472.763 kb on + strand, within yfdQat 2472.768 kb on + strand, within yfdQat 2472.773 kb on + strand, within yfdQat 2472.783 kb on + strand, within yfdQat 2472.783 kb on + strand, within yfdQat 2472.896 kb on + strandat 2472.896 kb on + strandat 2472.906 kb on - strandat 2472.943 kb on + strandat 2472.943 kb on + strandat 2472.946 kb on + strandat 2472.946 kb on + strandat 2472.951 kb on + strandat 2472.951 kb on + strandat 2472.952 kb on - strandat 2472.954 kb on - strandat 2472.954 kb on - strandat 2472.958 kb on + strandat 2472.958 kb on + strandat 2472.958 kb on + strandat 2472.962 kb on + strandat 2472.974 kb on + strandat 2472.974 kb on + strandat 2472.977 kb on - strandat 2472.979 kb on + strandat 2472.979 kb on + strandat 2472.979 kb on + strandat 2472.979 kb on + strandat 2472.979 kb on + strandat 2472.979 kb on + strandat 2472.984 kb on + strandat 2472.984 kb on + strandat 2472.985 kb on + strandat 2472.986 kb on + strandat 2472.987 kb on + strandat 2472.987 kb on + strandat 2472.987 kb on + strandat 2472.989 kb on + strandat 2472.992 kb on - strandat 2472.992 kb on - strandat 2472.992 kb on - strandat 2472.995 kb on - strandat 2473.009 kb on - strandat 2473.061 kb on - strand, within b2361at 2473.061 kb on - strand, within b2361at 2473.124 kb on + strand, within b2361at 2473.134 kb on + strand, within b2361at 2473.134 kb on + strand, within b2361at 2473.137 kb on + strand, within b2361at 2473.142 kb on + strand, within b2361at 2473.142 kb on - strand, within b2361at 2473.142 kb on - strand, within b2361at 2473.142 kb on - strand, within b2361at 2473.142 kb on - strand, within b2361at 2473.142 kb on - strand, within b2361at 2473.145 kb on - strand, within b2361at 2473.145 kb on - strand, within b2361at 2473.148 kb on + strand, within b2361at 2473.150 kb on - strand, within b2361at 2473.150 kb on - strand, within b2361at 2473.152 kb on - strand, within b2361at 2473.152 kb on - strand, within b2361at 2473.155 kb on - strand, within b2361at 2473.155 kb on - strand, within b2361at 2473.156 kb on - strand, within b2361at 2473.156 kb on - strand, within b2361at 2473.171 kb on - strand, within b2361at 2473.201 kb on + strand, within b2361at 2473.222 kb on - strand, within b2361at 2473.222 kb on - strand, within b2361at 2473.239 kb on - strand, within b2361at 2473.240 kb on - strand, within b2361at 2473.241 kb on + strand, within b2361at 2473.242 kb on + strand, within b2361at 2473.249 kb on - strand, within b2361at 2473.257 kb on - strand, within b2361at 2473.257 kb on - strand, within b2361at 2473.260 kb on - strand, within b2361at 2473.264 kb on - strand, within b2361at 2473.300 kb on + strand, within b2361at 2473.300 kb on + strand, within b2361at 2473.315 kb on + strand, within b2361at 2473.333 kb on + strand, within b2361at 2473.333 kb on + strand, within b2361at 2473.341 kb on - strand, within b2361at 2473.351 kb on - strand, within b2361at 2473.410 kb on - strand, within b2361at 2473.445 kb on - strand, within b2361at 2473.479 kb on - strand, within b2361at 2473.607 kb on + strand, within yfdSat 2473.627 kb on - strand, within yfdSat 2473.627 kb on - strand, within yfdSat 2473.629 kb on + strand, within yfdSat 2473.649 kb on + strand, within yfdSat 2473.724 kb on + strand, within yfdSat 2473.740 kb on + strand, within yfdSat 2473.763 kb on + strand, within yfdSat 2473.770 kb on + strand, within yfdSat 2473.788 kb on - strand, within yfdSat 2473.788 kb on - strand, within yfdSat 2473.866 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 Glucose 2% anaerobic
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2,471,090 + oweS b2358 0.27 +0.1
2,471,133 + oweS b2358 0.33 -0.5
2,471,133 + oweS b2358 0.33 +0.2
2,471,201 + oweS b2358 0.43 -0.3
2,471,201 + oweS b2358 0.43 -0.6
2,471,263 + oweS b2358 0.51 +0.3
2,471,277 - oweS b2358 0.53 +0.1
2,471,277 - oweS b2358 0.53 -0.2
2,471,372 + oweS b2358 0.67 -0.3
2,471,372 + oweS b2358 0.67 +0.5
2,471,526 + oweS b2358 0.88 +0.5
2,471,539 - +0.1
2,471,605 + +0.2
2,471,605 + -0.2
2,471,765 - yfdP b2359 0.38 -1.3
2,471,783 + yfdP b2359 0.43 +0.7
2,471,835 + yfdP b2359 0.58 -0.3
2,471,841 - yfdP b2359 0.59 -0.8
2,471,906 + yfdP b2359 0.77 +0.0
2,471,906 + yfdP b2359 0.77 -0.2
2,471,909 + yfdP b2359 0.78 +0.2
2,471,909 + yfdP b2359 0.78 +0.4
2,471,913 + yfdP b2359 0.79 +0.2
2,471,936 + yfdP b2359 0.85 +0.3
2,471,936 + yfdP b2359 0.85 +0.1
2,471,945 + yfdP b2359 0.88 +0.1
2,471,945 + yfdP b2359 0.88 +0.3
2,471,970 + -3.3
2,471,970 + +0.8
2,472,031 + +0.5
2,472,074 + -2.0
2,472,223 - yfdQ b2360 0.20 -1.3
2,472,227 + yfdQ b2360 0.21 -1.9
2,472,228 - yfdQ b2360 0.21 -1.0
2,472,235 + yfdQ b2360 0.22 -0.5
2,472,235 - yfdQ b2360 0.22 -3.6
2,472,235 - yfdQ b2360 0.22 -1.4
2,472,258 - yfdQ b2360 0.25 -1.8
2,472,272 - yfdQ b2360 0.26 -0.5
2,472,287 - yfdQ b2360 0.28 -1.7
2,472,287 - yfdQ b2360 0.28 -2.2
2,472,297 - yfdQ b2360 0.29 +0.0
2,472,303 - yfdQ b2360 0.30 -0.1
2,472,309 + yfdQ b2360 0.31 -1.5
2,472,309 + yfdQ b2360 0.31 -1.7
2,472,317 - yfdQ b2360 0.32 -0.4
2,472,317 - yfdQ b2360 0.32 -1.2
2,472,336 + yfdQ b2360 0.34 -0.1
2,472,337 + yfdQ b2360 0.34 -2.5
2,472,337 + yfdQ b2360 0.34 -3.8
2,472,339 - yfdQ b2360 0.35 -0.9
2,472,340 - yfdQ b2360 0.35 -0.3
2,472,343 + yfdQ b2360 0.35 -1.2
2,472,343 - yfdQ b2360 0.35 -0.3
2,472,346 + yfdQ b2360 0.35 -1.3
2,472,346 - yfdQ b2360 0.35 -1.0
2,472,353 - yfdQ b2360 0.36 -0.8
2,472,362 - yfdQ b2360 0.37 +0.2
2,472,363 - yfdQ b2360 0.37 +0.1
2,472,367 - yfdQ b2360 0.38 +0.3
2,472,367 - yfdQ b2360 0.38 -0.3
2,472,404 + yfdQ b2360 0.42 +0.3
2,472,410 - yfdQ b2360 0.43 +0.2
2,472,410 - yfdQ b2360 0.43 +0.3
2,472,417 - yfdQ b2360 0.44 -0.5
2,472,417 - yfdQ b2360 0.44 +0.1
2,472,451 - yfdQ b2360 0.48 -0.0
2,472,490 - yfdQ b2360 0.53 +0.4
2,472,492 - yfdQ b2360 0.53 -1.1
2,472,511 - yfdQ b2360 0.55 +0.6
2,472,577 - yfdQ b2360 0.63 -3.9
2,472,577 - yfdQ b2360 0.63 -1.2
2,472,578 - yfdQ b2360 0.64 -2.3
2,472,591 - yfdQ b2360 0.65 -2.6
2,472,618 + yfdQ b2360 0.68 -0.1
2,472,618 + yfdQ b2360 0.68 +0.4
2,472,626 - yfdQ b2360 0.69 -0.4
2,472,626 - yfdQ b2360 0.69 -0.6
2,472,630 + yfdQ b2360 0.70 +0.1
2,472,679 - yfdQ b2360 0.76 -1.5
2,472,684 + yfdQ b2360 0.76 +0.3
2,472,684 + yfdQ b2360 0.76 +0.4
2,472,686 + yfdQ b2360 0.77 +0.0
2,472,686 + yfdQ b2360 0.77 +0.5
2,472,704 - yfdQ b2360 0.79 -1.2
2,472,731 + yfdQ b2360 0.82 -0.1
2,472,745 + yfdQ b2360 0.84 -0.0
2,472,745 + yfdQ b2360 0.84 +0.2
2,472,745 + yfdQ b2360 0.84 +0.2
2,472,745 + yfdQ b2360 0.84 +0.3
2,472,745 + yfdQ b2360 0.84 -0.0
2,472,745 + yfdQ b2360 0.84 +0.6
2,472,745 + yfdQ b2360 0.84 +0.2
2,472,745 + yfdQ b2360 0.84 +0.0
2,472,746 + yfdQ b2360 0.84 +0.4
2,472,750 + yfdQ b2360 0.84 -0.2
2,472,759 - yfdQ b2360 0.85 -2.4
2,472,763 + yfdQ b2360 0.86 -0.2
2,472,763 + yfdQ b2360 0.86 +0.1
2,472,768 + yfdQ b2360 0.87 +0.3
2,472,773 + yfdQ b2360 0.87 +0.0
2,472,783 + yfdQ b2360 0.88 -0.2
2,472,783 + yfdQ b2360 0.88 +0.6
2,472,896 + -0.1
2,472,896 + +0.6
2,472,906 - -2.3
2,472,943 + +0.3
2,472,943 + -0.5
2,472,946 + -0.1
2,472,946 + -1.8
2,472,951 + -0.7
2,472,951 + -0.4
2,472,952 - +0.2
2,472,954 - +0.0
2,472,954 - -0.0
2,472,958 + -0.7
2,472,958 + -0.4
2,472,958 + +0.2
2,472,962 + -0.1
2,472,974 + -0.3
2,472,974 + -0.5
2,472,977 - +0.0
2,472,979 + -0.1
2,472,979 + -0.3
2,472,979 + -0.2
2,472,979 + +0.4
2,472,979 + +0.5
2,472,979 + +0.3
2,472,984 + +0.0
2,472,984 + +0.3
2,472,985 + -1.9
2,472,986 + -0.5
2,472,987 + -0.1
2,472,987 + -0.1
2,472,987 + -0.8
2,472,989 + -0.0
2,472,992 - +0.0
2,472,992 - +0.3
2,472,992 - -0.1
2,472,995 - -0.3
2,473,009 - +0.2
2,473,061 - b2361 b2361 0.10 +0.1
2,473,061 - b2361 b2361 0.10 +0.2
2,473,124 + b2361 b2361 0.22 -0.2
2,473,134 + b2361 b2361 0.24 -0.0
2,473,134 + b2361 b2361 0.24 +0.3
2,473,137 + b2361 b2361 0.24 +0.4
2,473,142 + b2361 b2361 0.25 -0.6
2,473,142 - b2361 b2361 0.25 -0.2
2,473,142 - b2361 b2361 0.25 -0.1
2,473,142 - b2361 b2361 0.25 +0.1
2,473,142 - b2361 b2361 0.25 -0.1
2,473,142 - b2361 b2361 0.25 +0.9
2,473,145 - b2361 b2361 0.26 +0.0
2,473,145 - b2361 b2361 0.26 +0.7
2,473,148 + b2361 b2361 0.26 -0.3
2,473,150 - b2361 b2361 0.27 -0.4
2,473,150 - b2361 b2361 0.27 +0.0
2,473,152 - b2361 b2361 0.27 +0.1
2,473,152 - b2361 b2361 0.27 +0.4
2,473,155 - b2361 b2361 0.28 -0.0
2,473,155 - b2361 b2361 0.28 +0.0
2,473,156 - b2361 b2361 0.28 -0.0
2,473,156 - b2361 b2361 0.28 -0.1
2,473,171 - b2361 b2361 0.31 +0.6
2,473,201 + b2361 b2361 0.36 -0.0
2,473,222 - b2361 b2361 0.40 +0.2
2,473,222 - b2361 b2361 0.40 -0.7
2,473,239 - b2361 b2361 0.43 -0.2
2,473,240 - b2361 b2361 0.44 -0.3
2,473,241 + b2361 b2361 0.44 -0.1
2,473,242 + b2361 b2361 0.44 -0.6
2,473,249 - b2361 b2361 0.45 +0.0
2,473,257 - b2361 b2361 0.47 +0.2
2,473,257 - b2361 b2361 0.47 +0.1
2,473,260 - b2361 b2361 0.47 -0.1
2,473,264 - b2361 b2361 0.48 +0.3
2,473,300 + b2361 b2361 0.55 -0.2
2,473,300 + b2361 b2361 0.55 -1.0
2,473,315 + b2361 b2361 0.58 -0.3
2,473,333 + b2361 b2361 0.61 -0.0
2,473,333 + b2361 b2361 0.61 -0.0
2,473,341 - b2361 b2361 0.62 +0.7
2,473,351 - b2361 b2361 0.64 +0.4
2,473,410 - b2361 b2361 0.75 +0.4
2,473,445 - b2361 b2361 0.82 +0.1
2,473,479 - b2361 b2361 0.88 +0.0
2,473,607 + yfdS b2362 0.20 +0.9
2,473,627 - yfdS b2362 0.26 +0.1
2,473,627 - yfdS b2362 0.26 -0.8
2,473,629 + yfdS b2362 0.26 -0.0
2,473,649 + yfdS b2362 0.32 +0.2
2,473,724 + yfdS b2362 0.53 -0.0
2,473,740 + yfdS b2362 0.57 -0.2
2,473,763 + yfdS b2362 0.63 -0.6
2,473,770 + yfdS b2362 0.65 +0.1
2,473,788 - yfdS b2362 0.70 +0.0
2,473,788 - yfdS b2362 0.70 +0.2
2,473,866 + -0.6

Or see this region's nucleotide sequence