Strain Fitness in Pseudomonas putida KT2440 around PP_5702

Experiment: Growth at pH9 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4628 and PP_4629 are separated by 115 nucleotidesPP_4629 and PP_5702 are separated by 59 nucleotidesPP_5702 and PP_4630 overlap by 16 nucleotides PP_4628: PP_4628 - conserved protein of unknown function, at 5,252,061 to 5,252,516 _4628 PP_4629: PP_4629 - Sensory box protein, at 5,252,632 to 5,253,060 _4629 PP_5702: PP_5702 - conserved protein of unknown function, at 5,253,120 to 5,253,737 _5702 PP_4630: PP_4630 - Transcriptional regulator, MerR family, at 5,253,722 to 5,254,633 _4630 Position (kb) 5253 5254Strain fitness (log2 ratio) -2 -1 0 1at 5252.215 kb on + strand, within PP_4628at 5252.216 kb on - strand, within PP_4628at 5252.216 kb on - strand, within PP_4628at 5252.219 kb on + strand, within PP_4628at 5252.219 kb on + strand, within PP_4628at 5252.227 kb on + strand, within PP_4628at 5252.348 kb on + strand, within PP_4628at 5252.486 kb on - strandat 5252.502 kb on - strandat 5252.725 kb on + strand, within PP_4629at 5252.725 kb on + strand, within PP_4629at 5252.746 kb on + strand, within PP_4629at 5252.758 kb on + strand, within PP_4629at 5252.759 kb on - strand, within PP_4629at 5252.887 kb on + strand, within PP_4629at 5252.888 kb on - strand, within PP_4629at 5252.962 kb on + strand, within PP_4629at 5252.962 kb on + strand, within PP_4629at 5252.963 kb on - strand, within PP_4629at 5253.163 kb on + strandat 5253.241 kb on + strand, within PP_5702at 5253.269 kb on + strand, within PP_5702at 5253.334 kb on + strand, within PP_5702at 5253.334 kb on + strand, within PP_5702at 5253.335 kb on - strand, within PP_5702at 5253.631 kb on - strand, within PP_5702at 5253.678 kb on + strandat 5253.678 kb on + strandat 5253.679 kb on - strandat 5253.679 kb on - strandat 5253.728 kb on - strandat 5253.728 kb on - strandat 5253.798 kb on - strandat 5253.851 kb on + strand, within PP_4630at 5254.088 kb on + strand, within PP_4630at 5254.161 kb on + strand, within PP_4630at 5254.162 kb on - strand, within PP_4630at 5254.162 kb on - strand, within PP_4630at 5254.282 kb on - strand, within PP_4630at 5254.317 kb on - strand, within PP_4630at 5254.472 kb on - strand, within PP_4630at 5254.485 kb on + strand, within PP_4630at 5254.486 kb on - strand, within PP_4630at 5254.521 kb on - strand, within PP_4630at 5254.521 kb on - strand, within PP_4630at 5254.639 kb on + strandat 5254.639 kb on + strandat 5254.640 kb on - strandat 5254.669 kb on - strandat 5254.696 kb on + strandat 5254.696 kb on + strandat 5254.696 kb on + strandat 5254.696 kb on + strandat 5254.696 kb on + strandat 5254.696 kb on + strandat 5254.697 kb on - strandat 5254.697 kb on - strandat 5254.697 kb on - strandat 5254.697 kb on - strandat 5254.697 kb on - strandat 5254.701 kb on + strandat 5254.701 kb on + strandat 5254.701 kb on + strandat 5254.701 kb on + strandat 5254.702 kb on - strandat 5254.702 kb on - strandat 5254.702 kb on - strandat 5254.705 kb on - strandat 5254.705 kb on - strandat 5254.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
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5,252,215 + PP_4628 0.34 +0.1
5,252,216 - PP_4628 0.34 +0.2
5,252,216 - PP_4628 0.34 -0.6
5,252,219 + PP_4628 0.35 -0.3
5,252,219 + PP_4628 0.35 -0.1
5,252,227 + PP_4628 0.36 +0.0
5,252,348 + PP_4628 0.63 -1.0
5,252,486 - +0.4
5,252,502 - -0.5
5,252,725 + PP_4629 0.22 +0.0
5,252,725 + PP_4629 0.22 +1.2
5,252,746 + PP_4629 0.27 +0.5
5,252,758 + PP_4629 0.29 -1.1
5,252,759 - PP_4629 0.30 -1.0
5,252,887 + PP_4629 0.59 -1.2
5,252,888 - PP_4629 0.60 +1.0
5,252,962 + PP_4629 0.77 -0.4
5,252,962 + PP_4629 0.77 +0.4
5,252,963 - PP_4629 0.77 +0.2
5,253,163 + -0.9
5,253,241 + PP_5702 0.20 +0.1
5,253,269 + PP_5702 0.24 +0.5
5,253,334 + PP_5702 0.35 +0.9
5,253,334 + PP_5702 0.35 +0.9
5,253,335 - PP_5702 0.35 +0.8
5,253,631 - PP_5702 0.83 +0.0
5,253,678 + +0.7
5,253,678 + -1.0
5,253,679 - -1.2
5,253,679 - +0.5
5,253,728 - +0.2
5,253,728 - -0.5
5,253,798 - +0.2
5,253,851 + PP_4630 0.14 -0.7
5,254,088 + PP_4630 0.40 -0.1
5,254,161 + PP_4630 0.48 -0.1
5,254,162 - PP_4630 0.48 -0.2
5,254,162 - PP_4630 0.48 +0.2
5,254,282 - PP_4630 0.61 -1.1
5,254,317 - PP_4630 0.65 -1.1
5,254,472 - PP_4630 0.82 -1.0
5,254,485 + PP_4630 0.84 -1.1
5,254,486 - PP_4630 0.84 -2.0
5,254,521 - PP_4630 0.88 -0.1
5,254,521 - PP_4630 0.88 -0.9
5,254,639 + +0.3
5,254,639 + -0.0
5,254,640 - +0.1
5,254,669 - -2.1
5,254,696 + -0.1
5,254,696 + +0.0
5,254,696 + -0.1
5,254,696 + -0.4
5,254,696 + -2.2
5,254,696 + -0.5
5,254,697 - -0.4
5,254,697 - -0.2
5,254,697 - +1.0
5,254,697 - +0.4
5,254,697 - +1.1
5,254,701 + +0.7
5,254,701 + -0.9
5,254,701 + -0.0
5,254,701 + -0.2
5,254,702 - -0.1
5,254,702 - +1.3
5,254,702 - +0.6
5,254,705 - +0.4
5,254,705 - -0.5
5,254,705 - +0.5

Or see this region's nucleotide sequence