Experiment: Growth at pH9 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5187 and PP_5188 are separated by 94 nucleotides PP_5188 and PP_5189 are separated by 126 nucleotides PP_5189 and PP_5190 are separated by 107 nucleotides
PP_5187: PP_5187 - putative thiamine triphosphatase, at 5,916,943 to 5,918,310
_5187
PP_5188: PP_5188 - putative transcriptional regulator (AsnC/Lrp family), at 5,918,405 to 5,918,875
_5188
PP_5189: PP_5189 - conserved protein of unknown function, at 5,919,002 to 5,919,307
_5189
PP_5190: PP_5190 - Type II secretion system protein, at 5,919,415 to 5,921,088
_5190
Position (kb) 5918
5919 Strain fitness (log2 ratio) -1
0
1
2 at 5917.567 kb on + strand, within PP_5187 at 5917.568 kb on - strand, within PP_5187 at 5917.568 kb on - strand, within PP_5187 at 5917.568 kb on - strand, within PP_5187 at 5917.624 kb on + strand, within PP_5187 at 5917.910 kb on + strand, within PP_5187 at 5917.910 kb on + strand, within PP_5187 at 5918.072 kb on - strand, within PP_5187 at 5918.113 kb on - strand, within PP_5187 at 5918.182 kb on + strand at 5918.334 kb on + strand at 5918.346 kb on + strand at 5918.346 kb on + strand at 5918.347 kb on - strand at 5918.347 kb on - strand at 5918.379 kb on - strand at 5918.425 kb on + strand at 5918.518 kb on - strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.577 kb on + strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.578 kb on - strand, within PP_5188 at 5918.622 kb on + strand, within PP_5188 at 5918.877 kb on - strand at 5918.906 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.998 kb on + strand at 5918.999 kb on - strand at 5919.001 kb on + strand at 5919.653 kb on - strand, within PP_5190 at 5919.653 kb on - strand, within PP_5190 at 5919.653 kb on - strand, within PP_5190 at 5919.845 kb on + strand, within PP_5190
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose remove 5,917,567 + PP_5187 0.46 +0.9 5,917,568 - PP_5187 0.46 +0.3 5,917,568 - PP_5187 0.46 +0.5 5,917,568 - PP_5187 0.46 +0.4 5,917,624 + PP_5187 0.50 -1.3 5,917,910 + PP_5187 0.71 -0.3 5,917,910 + PP_5187 0.71 +0.1 5,918,072 - PP_5187 0.83 +0.3 5,918,113 - PP_5187 0.86 -1.4 5,918,182 + -0.3 5,918,334 + +1.6 5,918,346 + +1.1 5,918,346 + +0.4 5,918,347 - -0.6 5,918,347 - +0.7 5,918,379 - -0.7 5,918,425 + -0.8 5,918,518 - PP_5188 0.24 -0.7 5,918,577 + PP_5188 0.37 -0.1 5,918,577 + PP_5188 0.37 +1.1 5,918,577 + PP_5188 0.37 +0.2 5,918,577 + PP_5188 0.37 +1.3 5,918,578 - PP_5188 0.37 +0.5 5,918,578 - PP_5188 0.37 +0.0 5,918,578 - PP_5188 0.37 +0.3 5,918,578 - PP_5188 0.37 +1.1 5,918,578 - PP_5188 0.37 +0.7 5,918,578 - PP_5188 0.37 -0.1 5,918,622 + PP_5188 0.46 +0.9 5,918,877 - +2.0 5,918,906 + -0.1 5,918,998 + +0.6 5,918,998 + +0.8 5,918,998 + +0.1 5,918,998 + +0.2 5,918,998 + +0.6 5,918,998 + +0.3 5,918,999 - +0.3 5,919,001 + +0.8 5,919,653 - PP_5190 0.14 -0.4 5,919,653 - PP_5190 0.14 +0.3 5,919,653 - PP_5190 0.14 -0.1 5,919,845 + PP_5190 0.26 +0.9
Or see this region's nucleotide sequence