Experiment: Growth at pH9 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5068 and PP_5069 are separated by 130 nucleotides PP_5069 and PP_5070 overlap by 4 nucleotides PP_5070 and PP_5071 are separated by 76 nucleotides
PP_5068: PP_5068 - conserved protein of unknown function, UPF0061 family, at 5,784,997 to 5,786,457
_5068
PP_5069: PP_5069 - Thioredoxin 2, at 5,786,588 to 5,787,022
_5069
PP_5070: PP_5070 - ParA family protein, at 5,787,019 to 5,787,792
_5070
PP_5071: PP_5071 - putative DNA-binding transcriptional regulator, at 5,787,869 to 5,788,768
_5071
Position (kb) 5786
5787
5788 Strain fitness (log2 ratio) -2
-1
0
1 at 5785.627 kb on + strand, within PP_5068 at 5785.720 kb on + strand, within PP_5068 at 5785.720 kb on + strand, within PP_5068 at 5785.721 kb on - strand, within PP_5068 at 5785.721 kb on - strand, within PP_5068 at 5785.721 kb on - strand, within PP_5068 at 5785.721 kb on - strand, within PP_5068 at 5785.793 kb on - strand, within PP_5068 at 5785.793 kb on - strand, within PP_5068 at 5785.975 kb on + strand, within PP_5068 at 5785.987 kb on + strand, within PP_5068 at 5785.987 kb on + strand, within PP_5068 at 5785.987 kb on + strand, within PP_5068 at 5785.988 kb on - strand, within PP_5068 at 5786.092 kb on + strand, within PP_5068 at 5786.092 kb on + strand, within PP_5068 at 5786.093 kb on - strand, within PP_5068 at 5786.200 kb on + strand, within PP_5068 at 5786.200 kb on + strand, within PP_5068 at 5786.275 kb on + strand, within PP_5068 at 5786.333 kb on - strand at 5786.333 kb on - strand at 5786.401 kb on + strand at 5786.401 kb on + strand at 5786.604 kb on + strand at 5786.605 kb on - strand at 5786.732 kb on + strand, within PP_5069 at 5786.733 kb on - strand, within PP_5069 at 5786.888 kb on - strand, within PP_5069 at 5786.910 kb on + strand, within PP_5069 at 5786.910 kb on + strand, within PP_5069 at 5786.910 kb on + strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5786.911 kb on - strand, within PP_5069 at 5787.021 kb on - strand at 5787.146 kb on + strand, within PP_5070 at 5787.146 kb on + strand, within PP_5070 at 5787.146 kb on + strand, within PP_5070 at 5787.147 kb on - strand, within PP_5070 at 5787.415 kb on - strand, within PP_5070 at 5787.415 kb on - strand, within PP_5070 at 5787.422 kb on + strand, within PP_5070 at 5787.422 kb on + strand, within PP_5070 at 5787.551 kb on + strand, within PP_5070 at 5787.551 kb on + strand, within PP_5070 at 5787.552 kb on - strand, within PP_5070 at 5787.552 kb on - strand, within PP_5070 at 5787.552 kb on - strand, within PP_5070 at 5787.552 kb on - strand, within PP_5070 at 5787.555 kb on + strand, within PP_5070 at 5787.656 kb on + strand, within PP_5070 at 5787.807 kb on + strand at 5787.808 kb on - strand at 5787.825 kb on + strand at 5787.826 kb on - strand at 5787.826 kb on - strand at 5787.993 kb on + strand, within PP_5071 at 5787.993 kb on + strand, within PP_5071 at 5787.993 kb on + strand, within PP_5071 at 5787.994 kb on - strand, within PP_5071
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose remove 5,785,627 + PP_5068 0.43 +0.3 5,785,720 + PP_5068 0.49 +0.6 5,785,720 + PP_5068 0.49 -0.6 5,785,721 - PP_5068 0.50 +0.0 5,785,721 - PP_5068 0.50 -1.6 5,785,721 - PP_5068 0.50 +0.5 5,785,721 - PP_5068 0.50 +0.3 5,785,793 - PP_5068 0.54 +0.0 5,785,793 - PP_5068 0.54 +0.6 5,785,975 + PP_5068 0.67 -0.4 5,785,987 + PP_5068 0.68 +0.1 5,785,987 + PP_5068 0.68 -0.1 5,785,987 + PP_5068 0.68 -0.6 5,785,988 - PP_5068 0.68 -1.6 5,786,092 + PP_5068 0.75 -0.1 5,786,092 + PP_5068 0.75 +0.6 5,786,093 - PP_5068 0.75 -0.4 5,786,200 + PP_5068 0.82 -1.1 5,786,200 + PP_5068 0.82 -0.7 5,786,275 + PP_5068 0.87 -0.1 5,786,333 - -0.3 5,786,333 - -1.2 5,786,401 + -0.6 5,786,401 + +0.8 5,786,604 + +0.4 5,786,605 - +0.8 5,786,732 + PP_5069 0.33 +1.2 5,786,733 - PP_5069 0.33 +0.7 5,786,888 - PP_5069 0.69 +0.0 5,786,910 + PP_5069 0.74 -0.1 5,786,910 + PP_5069 0.74 -0.1 5,786,910 + PP_5069 0.74 -0.8 5,786,911 - PP_5069 0.74 +0.3 5,786,911 - PP_5069 0.74 +0.3 5,786,911 - PP_5069 0.74 +0.7 5,786,911 - PP_5069 0.74 +1.1 5,786,911 - PP_5069 0.74 +0.9 5,786,911 - PP_5069 0.74 +0.5 5,787,021 - -0.1 5,787,146 + PP_5070 0.16 +0.4 5,787,146 + PP_5070 0.16 -1.1 5,787,146 + PP_5070 0.16 -0.4 5,787,147 - PP_5070 0.17 -0.0 5,787,415 - PP_5070 0.51 -0.0 5,787,415 - PP_5070 0.51 -0.2 5,787,422 + PP_5070 0.52 +0.7 5,787,422 + PP_5070 0.52 -1.1 5,787,551 + PP_5070 0.69 +0.1 5,787,551 + PP_5070 0.69 +0.1 5,787,552 - PP_5070 0.69 +0.5 5,787,552 - PP_5070 0.69 -0.4 5,787,552 - PP_5070 0.69 -0.9 5,787,552 - PP_5070 0.69 +0.5 5,787,555 + PP_5070 0.69 +0.2 5,787,656 + PP_5070 0.82 +0.4 5,787,807 + +0.4 5,787,808 - +0.1 5,787,825 + -1.9 5,787,826 - +0.1 5,787,826 - +0.2 5,787,993 + PP_5071 0.14 -0.5 5,787,993 + PP_5071 0.14 +0.5 5,787,993 + PP_5071 0.14 -0.3 5,787,994 - PP_5071 0.14 +0.2
Or see this region's nucleotide sequence