Strain Fitness in Pseudomonas putida KT2440 around PP_4859

Experiment: Growth at pH9 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4857 and PP_4858 are separated by 340 nucleotidesPP_4858 and PP_4859 are separated by 122 nucleotidesPP_4859 and PP_4860 are separated by 19 nucleotides PP_4857: PP_4857 - uncharacterized protein YhjG, at 5,522,806 to 5,524,872 _4857 PP_4858: PP_4858 - conserved exported protein of unknown function, at 5,525,213 to 5,525,710 _4858 PP_4859: PP_4859 - Transcriptional regulator, TetR family, at 5,525,833 to 5,526,468 _4859 PP_4860: PP_4860 - putative Mannose-6-phosphate isomerase, at 5,526,488 to 5,527,621 _4860 Position (kb) 5525 5526 5527Strain fitness (log2 ratio) -1 0 1 2at 5524.877 kb on + strandat 5524.878 kb on - strandat 5524.878 kb on - strandat 5524.926 kb on - strandat 5524.926 kb on - strandat 5524.973 kb on + strandat 5525.031 kb on - strandat 5525.083 kb on + strandat 5525.084 kb on - strandat 5525.102 kb on + strandat 5525.103 kb on - strandat 5525.108 kb on + strandat 5525.108 kb on + strandat 5525.109 kb on - strandat 5525.121 kb on + strandat 5525.122 kb on - strandat 5525.162 kb on + strandat 5525.162 kb on + strandat 5525.163 kb on - strandat 5525.796 kb on + strandat 5525.858 kb on + strandat 5525.858 kb on + strandat 5525.858 kb on + strandat 5525.859 kb on - strandat 5526.128 kb on + strand, within PP_4859at 5526.128 kb on + strand, within PP_4859at 5526.223 kb on - strand, within PP_4859at 5526.346 kb on - strand, within PP_4859at 5526.484 kb on + strandat 5526.635 kb on + strand, within PP_4860at 5526.711 kb on - strand, within PP_4860at 5526.818 kb on + strand, within PP_4860at 5526.819 kb on - strand, within PP_4860at 5526.819 kb on - strand, within PP_4860at 5526.866 kb on + strand, within PP_4860at 5526.866 kb on + strand, within PP_4860at 5526.866 kb on + strand, within PP_4860at 5526.866 kb on + strand, within PP_4860at 5526.866 kb on + strand, within PP_4860at 5526.867 kb on - strand, within PP_4860at 5526.867 kb on - strand, within PP_4860at 5526.869 kb on - strand, within PP_4860at 5526.903 kb on - strand, within PP_4860at 5526.903 kb on - strand, within PP_4860at 5526.995 kb on + strand, within PP_4860at 5526.995 kb on + strand, within PP_4860at 5526.996 kb on - strand, within PP_4860at 5527.086 kb on + strand, within PP_4860at 5527.087 kb on - strand, within PP_4860at 5527.087 kb on - strand, within PP_4860at 5527.210 kb on + strand, within PP_4860at 5527.247 kb on + strand, within PP_4860at 5527.247 kb on + strand, within PP_4860at 5527.248 kb on - strand, within PP_4860at 5527.248 kb on - strand, within PP_4860at 5527.258 kb on + strand, within PP_4860at 5527.258 kb on + strand, within PP_4860at 5527.258 kb on + strand, within PP_4860at 5527.258 kb on + strand, within PP_4860at 5527.258 kb on + strand, within PP_4860at 5527.259 kb on - strand, within PP_4860at 5527.299 kb on + strand, within PP_4860at 5527.299 kb on + strand, within PP_4860at 5527.299 kb on + strand, within PP_4860at 5527.300 kb on - strand, within PP_4860at 5527.300 kb on - strand, within PP_4860at 5527.300 kb on - strand, within PP_4860at 5527.300 kb on - strand, within PP_4860at 5527.300 kb on - strand, within PP_4860at 5527.399 kb on + strand, within PP_4860at 5527.399 kb on + strand, within PP_4860at 5527.400 kb on - strand, within PP_4860at 5527.400 kb on - strand, within PP_4860at 5527.419 kb on - strand, within PP_4860at 5527.432 kb on + strand, within PP_4860at 5527.432 kb on + strand, within PP_4860at 5527.433 kb on - strand, within PP_4860at 5527.433 kb on - strand, within PP_4860at 5527.433 kb on - strand, within PP_4860

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
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5,524,877 + +1.5
5,524,878 - +1.0
5,524,878 - +0.6
5,524,926 - +0.0
5,524,926 - +0.3
5,524,973 + -0.5
5,525,031 - -0.0
5,525,083 + +0.0
5,525,084 - +1.1
5,525,102 + +2.0
5,525,103 - -0.2
5,525,108 + -0.9
5,525,108 + +0.5
5,525,109 - +0.5
5,525,121 + +1.1
5,525,122 - +0.1
5,525,162 + +0.2
5,525,162 + +0.1
5,525,163 - -0.2
5,525,796 + -0.7
5,525,858 + -0.2
5,525,858 + +0.1
5,525,858 + +1.6
5,525,859 - +0.3
5,526,128 + PP_4859 0.46 +0.3
5,526,128 + PP_4859 0.46 +0.6
5,526,223 - PP_4859 0.61 +0.3
5,526,346 - PP_4859 0.81 +0.3
5,526,484 + -0.2
5,526,635 + PP_4860 0.13 +0.2
5,526,711 - PP_4860 0.20 -0.4
5,526,818 + PP_4860 0.29 -0.6
5,526,819 - PP_4860 0.29 +0.2
5,526,819 - PP_4860 0.29 +0.3
5,526,866 + PP_4860 0.33 +0.8
5,526,866 + PP_4860 0.33 +0.3
5,526,866 + PP_4860 0.33 -0.7
5,526,866 + PP_4860 0.33 -0.7
5,526,866 + PP_4860 0.33 +0.4
5,526,867 - PP_4860 0.33 +0.2
5,526,867 - PP_4860 0.33 +0.7
5,526,869 - PP_4860 0.34 +0.8
5,526,903 - PP_4860 0.37 +0.4
5,526,903 - PP_4860 0.37 -0.2
5,526,995 + PP_4860 0.45 -0.1
5,526,995 + PP_4860 0.45 +0.2
5,526,996 - PP_4860 0.45 -0.1
5,527,086 + PP_4860 0.53 +0.7
5,527,087 - PP_4860 0.53 -0.7
5,527,087 - PP_4860 0.53 +0.3
5,527,210 + PP_4860 0.64 +0.1
5,527,247 + PP_4860 0.67 -0.7
5,527,247 + PP_4860 0.67 -0.1
5,527,248 - PP_4860 0.67 +0.8
5,527,248 - PP_4860 0.67 +0.3
5,527,258 + PP_4860 0.68 +0.9
5,527,258 + PP_4860 0.68 +1.5
5,527,258 + PP_4860 0.68 +0.1
5,527,258 + PP_4860 0.68 +0.0
5,527,258 + PP_4860 0.68 +0.9
5,527,259 - PP_4860 0.68 +0.6
5,527,299 + PP_4860 0.72 +0.3
5,527,299 + PP_4860 0.72 +0.0
5,527,299 + PP_4860 0.72 -1.0
5,527,300 - PP_4860 0.72 +1.5
5,527,300 - PP_4860 0.72 +0.4
5,527,300 - PP_4860 0.72 +0.4
5,527,300 - PP_4860 0.72 -1.5
5,527,300 - PP_4860 0.72 +0.1
5,527,399 + PP_4860 0.80 -0.4
5,527,399 + PP_4860 0.80 -0.1
5,527,400 - PP_4860 0.80 +0.2
5,527,400 - PP_4860 0.80 -0.1
5,527,419 - PP_4860 0.82 +0.0
5,527,432 + PP_4860 0.83 +0.1
5,527,432 + PP_4860 0.83 -0.3
5,527,433 - PP_4860 0.83 +0.3
5,527,433 - PP_4860 0.83 -0.6
5,527,433 - PP_4860 0.83 +0.2

Or see this region's nucleotide sequence