Strain Fitness in Pseudomonas putida KT2440 around PP_4705

Experiment: Growth at pH9 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4704 and PP_4705 are separated by 81 nucleotidesPP_4705 and PP_4706 are separated by 60 nucleotidesPP_4706 and PP_4707 are separated by 75 nucleotides PP_4704: PP_4704 - conserved protein of unknown function, at 5,347,527 to 5,350,463 _4704 PP_4705: PP_4705 - Glyoxalase, at 5,350,545 to 5,350,958 _4705 PP_4706: PP_4706 - conserved protein of unknown function, at 5,351,019 to 5,351,321 _4706 PP_4707: PP_4707 - OsmY-related protein, at 5,351,397 to 5,351,747 _4707 Position (kb) 5350 5351Strain fitness (log2 ratio) -2 -1 0 1at 5349.600 kb on + strand, within PP_4704at 5349.600 kb on + strand, within PP_4704at 5349.600 kb on + strand, within PP_4704at 5349.600 kb on + strand, within PP_4704at 5349.601 kb on - strand, within PP_4704at 5349.601 kb on - strand, within PP_4704at 5349.640 kb on + strand, within PP_4704at 5349.640 kb on + strand, within PP_4704at 5349.640 kb on + strand, within PP_4704at 5349.641 kb on - strand, within PP_4704at 5349.641 kb on - strand, within PP_4704at 5349.643 kb on + strand, within PP_4704at 5349.643 kb on + strand, within PP_4704at 5349.644 kb on - strand, within PP_4704at 5349.644 kb on - strand, within PP_4704at 5349.644 kb on - strand, within PP_4704at 5349.644 kb on - strand, within PP_4704at 5349.887 kb on + strand, within PP_4704at 5349.888 kb on - strand, within PP_4704at 5350.092 kb on + strand, within PP_4704at 5350.093 kb on - strand, within PP_4704at 5350.188 kb on + strandat 5350.189 kb on - strandat 5350.189 kb on - strandat 5350.347 kb on + strandat 5350.347 kb on + strandat 5350.348 kb on - strandat 5350.386 kb on + strandat 5350.387 kb on - strandat 5350.387 kb on - strandat 5350.398 kb on - strandat 5350.462 kb on - strandat 5350.501 kb on + strandat 5350.502 kb on - strandat 5350.579 kb on + strandat 5350.579 kb on + strandat 5350.687 kb on + strand, within PP_4705at 5350.688 kb on - strand, within PP_4705at 5350.693 kb on + strand, within PP_4705at 5350.694 kb on - strand, within PP_4705at 5350.735 kb on + strand, within PP_4705at 5350.813 kb on + strand, within PP_4705at 5350.814 kb on - strand, within PP_4705at 5350.867 kb on + strand, within PP_4705at 5351.024 kb on + strandat 5351.025 kb on - strandat 5351.035 kb on + strandat 5351.172 kb on + strand, within PP_4706at 5351.172 kb on + strand, within PP_4706at 5351.173 kb on - strand, within PP_4706at 5351.173 kb on - strand, within PP_4706at 5351.173 kb on - strand, within PP_4706at 5351.179 kb on - strand, within PP_4706at 5351.205 kb on + strand, within PP_4706at 5351.205 kb on + strand, within PP_4706at 5351.206 kb on - strand, within PP_4706at 5351.206 kb on - strand, within PP_4706at 5351.316 kb on + strandat 5351.317 kb on - strandat 5351.317 kb on - strandat 5351.317 kb on - strandat 5351.317 kb on - strandat 5351.398 kb on + strandat 5351.424 kb on + strandat 5351.425 kb on - strandat 5351.425 kb on - strandat 5351.425 kb on - strandat 5351.454 kb on - strand, within PP_4707at 5351.454 kb on - strand, within PP_4707at 5351.591 kb on + strand, within PP_4707at 5351.721 kb on - strandat 5351.783 kb on + strandat 5351.800 kb on + strandat 5351.800 kb on + strandat 5351.801 kb on - strandat 5351.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose
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5,349,600 + PP_4704 0.71 +1.0
5,349,600 + PP_4704 0.71 -0.4
5,349,600 + PP_4704 0.71 +0.6
5,349,600 + PP_4704 0.71 +0.1
5,349,601 - PP_4704 0.71 +0.3
5,349,601 - PP_4704 0.71 +0.5
5,349,640 + PP_4704 0.72 -0.2
5,349,640 + PP_4704 0.72 +0.1
5,349,640 + PP_4704 0.72 +0.0
5,349,641 - PP_4704 0.72 +1.6
5,349,641 - PP_4704 0.72 +0.4
5,349,643 + PP_4704 0.72 -0.0
5,349,643 + PP_4704 0.72 +0.4
5,349,644 - PP_4704 0.72 +0.2
5,349,644 - PP_4704 0.72 -0.1
5,349,644 - PP_4704 0.72 -0.0
5,349,644 - PP_4704 0.72 +0.5
5,349,887 + PP_4704 0.80 -0.3
5,349,888 - PP_4704 0.80 -0.4
5,350,092 + PP_4704 0.87 +0.5
5,350,093 - PP_4704 0.87 +0.1
5,350,188 + -0.6
5,350,189 - -0.4
5,350,189 - +0.8
5,350,347 + -1.1
5,350,347 + -0.5
5,350,348 - -0.8
5,350,386 + +0.3
5,350,387 - +0.1
5,350,387 - -0.3
5,350,398 - +0.0
5,350,462 - -0.1
5,350,501 + +0.0
5,350,502 - +0.2
5,350,579 + -0.6
5,350,579 + -0.7
5,350,687 + PP_4705 0.34 +1.3
5,350,688 - PP_4705 0.35 +0.8
5,350,693 + PP_4705 0.36 +0.2
5,350,694 - PP_4705 0.36 +0.4
5,350,735 + PP_4705 0.46 +0.5
5,350,813 + PP_4705 0.65 +0.3
5,350,814 - PP_4705 0.65 -0.7
5,350,867 + PP_4705 0.78 +1.2
5,351,024 + -0.3
5,351,025 - -0.2
5,351,035 + +0.8
5,351,172 + PP_4706 0.50 +0.7
5,351,172 + PP_4706 0.50 +0.3
5,351,173 - PP_4706 0.51 -0.0
5,351,173 - PP_4706 0.51 +0.9
5,351,173 - PP_4706 0.51 -1.3
5,351,179 - PP_4706 0.53 +0.4
5,351,205 + PP_4706 0.61 +1.6
5,351,205 + PP_4706 0.61 +0.1
5,351,206 - PP_4706 0.62 -1.8
5,351,206 - PP_4706 0.62 +0.7
5,351,316 + -0.2
5,351,317 - -1.1
5,351,317 - +0.3
5,351,317 - +0.2
5,351,317 - +0.5
5,351,398 + -0.1
5,351,424 + +0.4
5,351,425 - +0.2
5,351,425 - -0.8
5,351,425 - +0.5
5,351,454 - PP_4707 0.16 +0.6
5,351,454 - PP_4707 0.16 +0.0
5,351,591 + PP_4707 0.55 -1.1
5,351,721 - +0.0
5,351,783 + +0.0
5,351,800 + +1.0
5,351,800 + -0.4
5,351,801 - -1.1
5,351,808 + +0.4

Or see this region's nucleotide sequence